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GT15296

CSHL Arabidopsis genetrap mutant lines

Original: GT15296

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15296

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22338631 [Map]; Strand: w
      • AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15296 - 3-prime edge 
    ACGCTCACCT CACTGTTCTC CTATTTTATT TTTATTTTTT TATTTTCTGT 
    TTTAAAATCA ATAAATAAAT ATTCGCTGAT GATAATGAAG AACATGAATT 
    CTTCGGCCCA ACTTTCGGTT CGCAATTAAA GCTGACCATC GCATCAATAC 
    TCTATTTTCA TTCTTTTTTC AGATTTTTTA ATATATCATG GAAGGGAATA 
    TATAATTTAA TTATTTATCT AGAAAAAACT CACAAGTTTT TGGTCGGAAC 
    TGTTGAAGAT TCCGGCTCCA CCGGAAGCAA AATTCACACC AGTCACGGCG 
    GAAGATTTTC TCTTCTCCCT TTTTAGTAAG CCTCTAAGTG AGAGATAGGG 
    AGGTGGTAAC GGTAAACCAA ATTTCTCAGC TAAGCAAACA AAAACACAAA 
    TAATTTAATT GTTAGAACTA CGTGTAATAT TATCTCTTAA AATTACTATA 
    TTTTCAACGT CTGACCACTT TTTTCAATTA GTGTATATAT GAGTGAAAAT 
    ATTTAATTTT TAATGGCCAG CACGTTACGC TATCTAAATC AAACCAATCG 
    TGGCCTGCCA TAACATAACA CCAACACTAA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22338736 [Map]; Strand: w
      • AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G55045.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15296 - 5-prime edge 
    CCTACTTTCT CCCTGGCGAG AATCGAACAC GCGACCTTCA GATCTTCAGT 
    CTGACGCTCT CCCAACTGAG CTATCCCCGC AACTTGTTCT ACATTTGTTA 
    ATGGTTTTAT TTATCTGGCA GGGACAAGCT ATTCCTTTAT CCAAGCAAGT 
    CAACAATTGG CTCTCTATTC ATGAAGAAGT CATGAAACTT GAACCATCCG 
    CAGCACAGCT TCACCTATCC AAATCTCTAT TCACTGTTGT CATAGGAAGT 
    AACGATCTTT TCGATTACTT TGGATCGTTC AAACTCCCAC GCCAGAGCAA 
    TCCTCAACAA TATACACAAT TAATGGCTGA TAAACTCAAA GAGCAATTGA 
    AGGTAAACAA AAATTTGTCT TCTTAAATAG GTATATATCT TTATAAGTTG 
    ATGAAACTTA TTTTGAGCAA TT

AT5G55045.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Phe (anticodon: GAA)
Link
InterPro Scan - TAIR

AT5G55050.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR