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GT15309

CSHL Arabidopsis genetrap mutant lines

Original: GT15309

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15309

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18101413 [Map]; Strand: w
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: exon24 (3UTR)
    Flanking Genome Sequence: GT15309 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATGGTGT 
    ATATTGAGTT TGCAAATTGT TAATGATTAG ACTGAAAAGA TTTGTCTCTA 
    TTCAAAAATT AATATTAACT TTCCAACAAA TTGAGTTACA TGATTAAATA 
    AAAAATGACT TGAATAACCT CAGTCGATTT TGTTTTGGTA CATATAGCTT 
    CGAGTTGGGT ATGAATTCGA ATTCATTGCA CCCATGGTGA CATTGTCAGA 
    TATAAGATGT ATCAACATTG TTTTACTTTT GTTAGATAAG TAGCATTTAT 
    ATATTATTTC GCACATTTTC AATCCATCCG TACAATTCTG GACACCAACC 
    TTTGTGTTTT ACTTCTACAA GTAGTAAAAA TCTCTGGGTC CTTTTGTCCT 
    TTATATTCAA TATATCTATG TGAGTTTTTA TAAACAATGT AACTGTATAT 
    TCAGAGAATA TGTCAACATC CAGATCTGCA TTCGTCGGGA TATTTTTACG 
    TACGCCTCAT ACATATGGAG AGAAAAAAAA CAAATTTTCA TACATACATA 
    AAACAATTTT CGATTTAATC AATGTGGGGA ACCATATACA GTTCACATAT 
    TTATCGCATG TCACCTAACA AAACTAATAT CGCAAAACTC ACACCATGTG 
    GGACTATATC CCTTGGTTGC CCCAAAA

AT4G38780.1

Model type
Protein coding
Short Description
Pre-mRNA-processing-splicing factor
Computational Description
Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR