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GT15325

CSHL Arabidopsis genetrap mutant lines

Original: GT15325

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15325

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10712706 [Map]; Strand: c
      • AT3G28570.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 817; Region: intergenic
      • AT3G28580.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -2917; Region: intergenic
    Flanking Genome Sequence: GT15325 - 3-prime edge
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CGGCGACGAC ATGCTTCAGG TCTGTTTTGG TTTGTAGCCG ATTAAAAAAG
    CTTTCGAAGA CTGAGTGAGA TGGGCTTCGG ATTGGGCTTA TGTATTGGGC
    CTAAAAGTTT GCTTATTTTT CTTACCAAAA CCCTCTATGA GACAACTCCA
    CAATTCGATT ATTCCAAAAT CAAGCTTCAC AAGAGAAGAA GAACTCGTTT
    TTTGAAGTCT TCAAAAACAG TCAAAGCCAC AACAAGGAGA TTTCACTATT
    GAAAACCAAT AAAATTCTAT TGGTGCTATT TCATTAGCTG TTTTGAATTA
    AATAGGTACA TTAATGTTAA TGTAAAAGTT CACCTCCTAC ACTTTGTGTT
    TAATATGGAT TATTTTTGTG ATTAGTATAA CAGAGAACTC TAAGAACTAA
    TTTTGATTTT CGAATTTTAT TTTATTTTGT TTGCTTCACT TTTGCATATC
    TAACTAAAAT GACTATAGCT AGTAATAGTT TTCGTAAATC TGAATAAAAG
    TTGCAAGATG TATGTACAAC AAATAGTAAT TGTGTTTTAT CCATCTAATT
    TCAACAACAC CAAAAATGAT CTCACGTTGA TATTGTGGGA TATTCAAAAA
    GTTAGTACAC GCAGATTGTC CACCATGTGT GTCATAACAT CAACACTTTA
    TGGTAAATCA AGAATGATCA GAGTAATGAT TAGCAAGGTT ACTCTAGGTA
    TTC
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10712724 [Map]; Strand: c
      • AT3G28570.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 835; Region: intergenic
      • AT3G28580.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -2899; Region: intergenic
    Flanking Genome Sequence: GT15325 - 3-prime edge
    TACCGACCGT TACCGACCGT TTTCATCCCT ACTTATACGA GATGCGTCGA 
    GCCAAGCACA GGACTACCAA CAATTAAAAA AGCTTTCGAA GACTGAGTGA
    GATGGGCTTC GGATTGGGCT TATGTATTGG GCCTAAAAGT TTGGTTATTT
    TTCTTACCAA AACCCTCTAT GAGACAACTC CACAATTCGA TTATTCCAAA
    ATCAAGCTGC ACAAGAGAAG AAGAACTCGT TTTTTGAAGT CTTCAAAAAC
    AGTCCAAGCC ACAACAAGGA GATTTCACTA TTGAAAACCA ATAAAATTCT
    ATTGGTGCTA TTTCATTAAC TGGTTGGAAT TAAATAG
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10712596 [Map]; Strand: c
      • AT3G28570.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 707; Region: intergenic
      • AT3G28580.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -3027; Region: intergenic
    Flanking Genome Sequence: GT15325 - 5-prime edge
    CCTACTTTCT CCCTGGGATC TCTGCAATTT CAAGTGAGTT CTTTGCCGTC 
    TTCTCTATAC AAAGTGAGGA GCTTTATTTT TCTTCTTTAT TGGTGGATCT
    CAAGTCAACC CCCTTTCTTT CGTTGAAGGT GCTAGAATAC AATGTAAGTG
    GAGGTGAGAC CCTAATCACC AATTCTCACA CACATTTGCT TCATCTCACT
    CGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10712597 [Map]; Strand: c
      • AT3G28570.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 708; Region: intergenic
      • AT3G28580.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -3026; Region: intergenic
    Flanking Genome Sequence: GT15325 - 5-prime edge
    TCCTACTTTC TCCCTGGGAT CTCTGCAATT TCAAGTGAGT TCTTTGCCGT 
    CTTCTCTATA CAAAGTGAGG AGCTTTATTT TTCTTCTTTA TTGGTGGATC
    TCAAGTCAAC CCCCTTTCTT TCGTTGAAGG TGCTACAATA CAATGTAAGT
    GGAGGTGAGA CCCTAATCAG CAATTCGCAC ACACATTTGC TTCATCTCTC
    TCGAC

AT3G28570.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28610.1); Has 20517 Blast hits to 19409 proteins in 2851 species: Archae - 1288; Bacteria - 6773; Metazoa - 3258; Fungi - 2817; Plants - 2531; Viruses - 34; Other Eukaryotes - 3816 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28580.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-ATPase 1 (TAIR:AT5G40010.1); Has 26015 Blast hits to 22183 proteins in 2894 species: Archae - 1297; Bacteria - 7409; Metazoa - 4737; Fungi - 2999; Plants - 2564; Viruses - 69; Other Eukaryotes - 6940 (source: NCBI BLink).
Link
InterPro Scan - TAIR