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GT15342

CSHL Arabidopsis genetrap mutant lines

Original: GT15342

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15342

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490657 [Map]; Strand: w
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15342 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAAC 
    CGGAGGATAG GAATGAGAAT CGCAGGATTT TTGGAGTCGT GGTGAATATA 
    ATTCAAATGG GGGGAGAGAG ATAAAGAGAA AGAGAAATCC CCCATTCCTC 
    CTCTCCAGAG ACGACAGCTC ATGAGAGATT TCGTCGTCTT TTGTCGGAGA 
    CTCTTAAAAT ATAATATAAA TCTGCTGCTT CGCGGACCAC CTTCTTATAT 
    TATCCAGTAG ACATCCGCCC GCTTCTCATT NCTGCTCGAC AAGCGGAAGA 
    TTTCACTGAG TCAAATTCTG CTCTTCCCAC CGACTCTGTT TTCGAACCAG 
    ACTCTGATTC CGACGTGGCA CCTGCTTCTA TTGCTTCCGA TTTACAAAAT 
    TCACGAGTTG ATTCATCTGA TTCATCGACG CCGGATAAGA ATCTTGCTTC 
    TGGTGATACT TTGGCTCAAA TTGATGATTC TCCTGATATT GTCTCAACTC 
    CTAATCGTAA TAATCAGCCA TTGTTCGTTG TTGACAGTCC GTTTGTTGAA 
    GCTACGTCTC CTCGTCAAAG AAAGCGTCAG ATGTAGACAG GCGGTTCGTC 
    TGCAGGATTA CGTTCTTTAC AATGCAACAG TCTCTCCAAA AAACCCCCAC 
    GCTCTTCCCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6929179 [Map]; Strand: c
      • AT4G11390.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15342 - 5-prime edge 
    CTACCTTTTT GCCTTCACAT GCTTTATTGC ATTTTTGGGT TTCAAAATTC 
    CTGATCCACT CCGCCTGATG GGATCTAGCA AGTTAAATAG GCACTCGGTA 
    GAACAAACGT ATGTATCCGA GGTTCCAAGC ATTTTCAACA TGATAGGATA 
    AATGCAATGC GACTTACACC ATCTGCAAAA TGGACGAGAT ATACTATTAT 
    TGAGCACCAC CTCAAATGAT TTGCTTAAAA CCTCCACTGT GCTTCATCTC 
    ACTCGAC

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT4G11390.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G11550.1); Has 1109 Blast hits to 539 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1107; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR