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GT15344

CSHL Arabidopsis genetrap mutant lines

Original: GT15344

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15344

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4169863 [Map]; Strand: w
      • AT5G13130.2 - [+] show detail - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
        Distance: 0; Region: intron13 (CDS)
      • AT5G13130.1 - [+] show detail - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
        Distance: 0; Region: intron14 (CDS)
    Flanking Genome Sequence: GT15344 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATT 
    CAAACGATGA AGATCATTAT CGCCAAAAAA AAACAAAGAC TAATGTTGTA 
    AGAAAAAAAA AAAGGGTTTC TTGGCCCCCC AGCCGGTGTT TTTGTCCCCG 
    CCCCCCAAAA ACAAATTGGG GGGAATCCGG GTTCCCCTTT GGGAACCTGG 
    GTTTAAAAAA AAAGGGCCCG GGTTTTTTGA AACCCCGGGA AAAAAAAATT 
    TAACCCAAAT TTGCCCCCAA AAAAACTTTT TTTCCAAACC CGAAAAAACC 
    TCCAAAAGGG AAAAAACCCC TTTTCCCCAG CCCAAAAAAA CTTTGGGTTT 
    TCCCCCCCAA CCCGGGGTTG GGGGCAAAAC CCCCCCCCCG GGGTTCCCCC 
    CAATTTGGAG CGGGGTTTTT TTAAGGCCCC CTTTTTTTAA CCCCCTTTGG 
    GGTCCCAAAA AAAGTTTTTT TCCCCCCGGG GGATTTGGTT TCCCCCCAAA 
    GGGTCAACAT TTGGCCCGAA ACCCCCAACG GGGCCGGGGG GCCCAAAAAA 
    AAACCCCTTA ACACCCTTTA TTTTTTTAAA AGGCCCAGGG GTTTCCGGAA 
    CCCCCCTTCC AAAAATCTTT GGGTCCCCTC CGGGAACAAA ACCAATTTCG 
    GGGCCCCTTG AAAACCTTTC AAACCAAAAG AAAAAAAAAC CTTTAAAAAA 
    AGCCCAAACC CC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 162270 [Map]; Strand: c
      • AT4G00360.1 - [+] show detail - cytochrome P450, family 86, subfamily A, polypeptide 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15344 - 5-prime edge 
    AAGTCACCGA CGATCCCGCC GGTACGAAAG TTCCGTCCGG TAAGATATCG 
    TTCGTTCACG ACGTGCTTTG AATCTTCCGG CACCGACGGG TAAAGCCTCA 
    ATGTCTCAGA GAGCGCGGCC TTCAGGTAAA CCAACCGGTC CACCTCATCG 
    AATTCCAACG GCTCCGCCGT CCACGACGAT ACATCGGTTC CCCGTGTCTC 
    AATCAGAACG GAGCATATCT C

AT4G00360.1

Model type
Protein coding
Short Description
cytochrome P450, family 86, subfamily A, polypeptide 2
Curator Summary
Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.
Computational Description
"cytochrome P450, family 86, subfamily A, polypeptide 2" (CYP86A2); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily A, polypeptide 4 (TAIR:AT1G01600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13130.1

Model type
Protein coding
Short Description
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Computational Description
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT5G50780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13130.2

Model type
Protein coding
Short Description
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Computational Description
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT5G50780.1).
Link
InterPro Scan - TAIR