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GT15365

CSHL Arabidopsis genetrap mutant lines

Original: GT15365

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15365

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15365 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGAAATTA GGGTTTGATT 
    TTAAATTTGA CAGTTTTTTT TTTTTTTCGG AAAAAGGGGG GGGGCCGGGG
    CAAATTTTTT TTTAAAAAAA GGGGGGCCCA AGGGGTTTTT TTTTGGGGCT
    TTTTTTTTAT GGGGTTACCC TTTTTAAAAG GGTTAAAAAA ATTTCCCCAA
    ATTCCAAACC CCCCTTTAAA ACCCCCCCCA AAAAAGGGGT TTTCCAAATT
    TTCCACCCCA AAAAATTTAA GCTTTTTCAT TTTCCCCCCC CCTTTCCCAA
    AGGGCGGCTT AAATTTTAAA AAGGAAAACC CCCCCCTTTC CTTTTTTTCA
    AGGGGAAAAA AACCAACCTT TTTTTTGGGC CCGGGGAAAA CCCAGGGGGG
    GGGGGCCCCC TTAAAAAACC CTTTTTCCCT AAAGGAATTC CCCTGGGGGA
    CCCCCCAGGG GAAAACCCCC TCCGGGGGGG AACCCTAAAA AATTTTGGTC
    CCGGTTCCCC CCAAAAAAAA TTTTTTTTTC CCCCAACAAA GGGAAGGCCC
    GGAAGGGAAT TTTCCCGGGG GGGGGAAACC CGGAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11523608 [Map]; Strand: w
      • AT1G32045.1 - [+] show detail - transposable element gene
        Distance: -2732; Region: intergenic
      • AT1G32049.1 - [+] show detail
        Distance: -4120; Region: intergenic
    Flanking Genome Sequence: GT15365 - 5-prime edge
    ATCCTACTTT CTCCCTGCTA ATTTCATATA TCTTCTTCGT CCTCTTTCTC 
    TCCTTTACCT CTTTGATCTC TTCCTCAATT CTTCCTTTCT TCCTTCCCTT
    CTCCTACCTC TCTTTTATCT CTTCACTCTC TTTTCCTATG ATTATATACC
    CTTGATCTAT TGGAGTTTAG CAATTTCTAT CACTCTATAT CACTCTTGCT
    CTCATCTCCA TATTCTTCTT CTTAAATTCT TTCTCACTTA TGGTTTCGTT
    GGCCTGAAAC CCCAAACAAT CTTCGAAAGC CCGGTTCTTT GCCATTCAAT
    TGTGTCAGCC TCCTCCCACT TTATACTTCT CTTTTGCCTC CGCTGGTACA
    ATTTTGTTAT GGGTCAGATT TATGAACACT TGGATTTGGT TTTGTAGGGT
    TGAGTTGATC AATTTGGGCT AGACTGATTT CTTCGAAGCT TTTGGCCGAA
    GTTATGATAA TGCTTTTAAT GACCTCCAGG TGTTCGAAGA AATGCCTCAT
    TATTGGGTTG CTTGGTTTTT GTAACATTGT TTGGCGTTTT GTAGGCAGAT
    TCATATTATG ATGATGTTTT CCATGACCTC TAGGTGTTCG TACTAATATG
    TGATGGAAAA

AT1G32045.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.7e-07 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT1G32049.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR