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GT15376

CSHL Arabidopsis genetrap mutant lines

Original: GT15376

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15376

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8091490 [Map]; Strand: c
      • AT5G23955.1 - [+] show detail - transposable element gene
        Distance: 1068; Region: intergenic
      • AT5G23960.1 - [+] show detail - terpene synthase 21
        Distance: -1479; Region: intergenic
    Flanking Genome Sequence: GT15376 - 5-prime edge 
    TCCTACTTTC TCCCTGTATT TAGTAGGACG TAATATGACG CATCGTTTGC 
    TATGAGAGTT GGTCGATGTT CTCGGCCACG GGACGACATT TTTTAGAGGG 
    TAAAATTGGA ACTTTGCTTG AACCAAAAGA CAAAACTTGG AGATTAATAA 
    GAGCATCATG GTGATAAATG GAAGCTCTTT CATAAGATTT TCTTTGATTA 
    AATTGAAAAA AAATAATCAA AACTGATTAA AAGAAGAGCT GGTTCTCTTC 
    AGAGAGTTTT GAGAATGAGA GAGAGAGAGA ATCTGACATG TGTCAACGTG 
    TAATTGGTTG CTTAATATTA ACAAAAGAAG AAATAAATAA ATTGAGTTAT 
    ATTTTTTTCT TTACATTACA CGGAATCGTC AGTTAATCTC CCATTCCCGC 
    TCCAAAATCA ATCAATTTTA ATCGCGATTA ATTTAAATTA GAATCGTAGT 
    CGGTTTTGTA TATATCATGG TCCAGTGAAA AACATAGTTG TCT

AT5G23955.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 2.6e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT5G23960.1

Model type
Protein coding
Short Description
terpene synthase 21
Curator Summary
Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
Computational Description
terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR