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GT15398

CSHL Arabidopsis genetrap mutant lines

Original: GT15398

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15398

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490661 [Map]; Strand: w
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15398 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGA 
    AATGACTTGG TAATGATTCC GTATTGATAA AGACCGATAA ACCATCTCCA 
    ACACCTATAT CACGTACAAT TCTCCTGTAC GCCATGCATC AACTGTGGCG 
    GCGAATCTGA CTACATATTA TACTTATGCT TGAGAAATTT AAACTTTATG 
    AATTAGTAAC TCCAATGATG AAGCAAGCAC TTGCCGAAAT CTCACTAGCT 
    CTCATATATG TCATAAAGAA CTTTCAAGAT TTTGAACTAA GTAATTGTTT 
    ATTCGAAACC AAGTATACCT GCTGTTCTGT CTAAACTGAA TGGGTTTTCT 
    TAATTGAAGC ATGCCAAGCA TTCAGCAATT AACTAAAGGC TCTTAGTCAA 
    TACTAAACTA CTCCTTTTTT CTTCTACACC ACTGCAATAA AATGCATCTT 
    TTCGNCCTCT CACTAGGGNT CAAATTGATG ATTCTCCTGA TATTGTCTCA 
    ACTCCTAATC GTAATAATCA GCCATTGTTC GTTGTTGACA GTCCGTTTGT 
    TGAAGCTACG TCTCCTCGTC AAAGAAAGCG TCAGATTAGA CAGTCGGTTC 
    GTCTGCAGGA TTACGTTCTT TACAATGCAA CAGTCTCTCC AATAAACCCC 
    CACGCTCTTC CC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15290459 [Map]; Strand: c
      • AT2G36430.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15398 - 5-prime edge 
    CTTTCTCCCT GCTCTAGAGT TAGGTTTTGG GTTCTAGTGA GCAGAACGTT 
    TAGGTAACGC CATTTGTGTT CTTCAATCAT TTTGAGTTGT GTTTGGCCAC 
    GGTGGTACGG TCCAATCGAG ACCACTCGTG GCTCATAGCA TCTTCCATTA 
    CAATCAATCA TGCTCTGAGG TACCCGGAAG ATGGAGCAAG TAGGTTTCCC 
    GGCGGCCGAA CTGAGCAACC GTGGTGGTTC CTTCAGCTTC TTATGCATCC 
    TCTCAATGTG GATCTTGAGG AGGCTTTCTC CCTCGGAGGT AGAAGGTGGT 
    TGCTCCGCCG CATCCACCAT TTTGATTGGT GTGAAATTAA TGGAAATGAT 
    CTATAAAAAA GTGATAAGGG GTAGTTTTGG GACTAAACTG GTCTTTGTGA 
    TTGGTATATT TCTTTTGTTG GTCCACATCA TCGTCACATA ATGGAAGGTG 
    GTTCATTTTA AGCTTGATAT TATTTATTTA AAACTTTGAT GTAGATTTTT 
    CAATGAAGAC TTAATTAATA GTCATGGTTC ATGACTTGGT CCATCCATGT 
    TCTCGCTCCG AATTTTTTTT GAAGAACTAG TAGAGATTTT TCGTAATGTT 
    TTATCTCTAG AGTTA

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT2G36430.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22550.2); Has 1137 Blast hits to 1027 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR