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GT15404

CSHL Arabidopsis genetrap mutant lines

Original: GT15404

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15404

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6192204 [Map]; Strand: c
      • AT4G09840.1 - [+] show detail - unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; ...
        Distance: -540; Region: promoter
      • AT4G09840.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -540; Region: promoter
      • AT4G09850.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -308; Region: promoter
    Flanking Genome Sequence: GT15404 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTTAGATGAG AGTAAAAAAC ACAAAGGTGT TTAGAGGAAG AATTATAATA 
    GACTCTCATC AAAATAATGT TACAACGTAC ATTCTCTTAT ATAGAAATTA 
    TGATAAACAT AAATGTAAAT AATATATTTA AATTTAGATA TAATGTTAAA 
    CTTCCAAAAA TTCCAATATT AACATTTATT TTATAGAATA ATATCTTCTT 
    GCCATATCTC GATCTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6192149 [Map]; Strand: c
      • AT4G09840.1 - [+] show detail - unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; ...
        Distance: -485; Region: promoter
      • AT4G09840.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -485; Region: promoter
      • AT4G09850.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -363; Region: promoter
    Flanking Genome Sequence: GT15404 - 5-prime edge 
    CTTTCTCCCT GCATCTAACT TATCATGTGG TTATCATCAA CATTAGAAGA 
    ATGGACATAA CTATCTTCTC CTGGGTTTTA CGGTGACATG GTGATGATGA 
    TGTGGTCTCC GGCGGATTTA CTCATTTAGT TAGTTCTTTG ATGCTTTGTT 
    CCGTTTCTTT TGAGCAACAT ATACCCTTTC TAATGAAAGC AGTCAAGGTT 
    GTGGTTTTAA ATCTGAAGCA GGACTTGAAG ATTATGAAAA TGTTAACTTC 
    TGAGTAGATG AAAAAGGGAT TATCAATCTT CTTTAGATAA TCCAACATGA 
    TAATGCTCAT TAGCTTATTG AGTTCTGTAA GTGGATGTTT GAATGTTTCC 
    ACTGTTGTAA TACTTTGTAA CACTTGTGTT ATATATAAAA GCCACACACT 
    TAATGAGAAA AAAAAAAACA GGGTTGGATT CTTTATTTTC CCATTCTTCA 
    GGGCCAATAA ATAAAGGGAA ATTCCTTTAC ATATAACACC CCAAATTCTC 
    TACCCGTTTC AATTAGATCT CCAAATTCAA AATTCCAATC AACCCAAATG 
    GGGAAAGTGG GTGCT

AT4G09840.1

Model type
Protein coding
Computational Description
unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 9; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09840.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 9; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09850.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: synergid; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR