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GT15413

CSHL Arabidopsis genetrap mutant lines

Original: GT15413

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15413

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19381391 [Map]; Strand: c
      • AT5G47850.1 - [+] show detail - CRINKLY4 related 4
        Distance: -309; Region: promoter
      • AT5G47860.1 - [+] show detail - Protein of unknown function (DUF1350)
        Distance: -128; Region: promoter
    Flanking Genome Sequence: GT15413 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATAATA GGGCTTGTAC 
    AAATCCTTCA TGAGAGGATG ACACTCTTCG TCATTTAATG AAAGCAAATG 
    TGGCCCATTA AGTATAATTG AAGCCCAATC ACCTTTTACA CAATTAACAA 
    TTAAGTATTT GGTCTCATCA CAATGTTTGC GTTAGCTGCG AAACAAGATG 
    CTGTTACAGT CATAGAAGTC TTATGCGTAC ACGACTCCGA TTTCAAAATC 
    TGAACGGAAT ATAAACTCTC GACGACGAAA ATCTCAAAAT ACCCAAAATC 
    TCCTCCGACT CCGAGCTATG GCTACGTGTT CCATCTTGCC GTCACCGTCT 
    TTCTCTCCCC GCCGGCGATT CTGTAGCTTT TCTCGCAATC GCCGGTCTCT 
    ACCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20204255 [Map]; Strand: c
      • AT5G49730.1 - [+] show detail - ferric reduction oxidase 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15413 - 5-prime edge 
    CTTTCTCCCT GCCCTGAACA CTCGGTGATG ATTTCCTCAC ATTTGTCTCC 
    TCCAAGACTT TCCTAGGCAC CACAGGTTAC ATTAACGAGC AGATGCTTTG 
    CTTTCTACGG AAACATGTCC AAAAAGTGTA ACTAATTTCA TCCTTTAATT 
    GTCTAAATTT GCAGGAACCA TGTTCTTGAT TTTCAGTTGT CCGATTCTCC 
    TTCACTCGAC GAANANCTTC TCTCTATCTC ATTATCTCCG GGGAAGACAA 
    GGTCTTCACT AAGTACGTGT AATAATATCC CCAATTGCAT TCTTTTGGTT 
    GTATCAATTT TTGTTCTTGC ATAAATGTGT GTGTCATGAT GATTGTGAAG 
    GAAGAAGATA TCGAAATTCC CGAGGTTTAG GCTATGGACA TTCCCTGTTC 
    TTGTGGATGG ACCATTTGGA GTTGTTTCTG CAGCTGAGTT TCTTGGAATT 
    ATGGTCTTCT CTGTTTTTTT CCTTTGGTCT ATCTATGCTT ATACCTTGAG 
    GAATCTTGAC CTTCTTGAAC GCTTCCACGT CCTTCCCAAG AATCGAAGGT 
    TCTTAAAACT CTTCCTTTTT TT

AT5G47850.1

Model type
Protein coding
Short Description
CRINKLY4 related 4
Computational Description
CRINKLY4 related 4 (CCR4); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 3 (TAIR:AT3G55950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G47860.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1350)
Computational Description
Protein of unknown function (DUF1350); LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT3G43540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49730.1

Model type
Protein coding
Short Description
ferric reduction oxidase 6
Curator Summary
Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.
Computational Description
ferric reduction oxidase 6 (FRO6); CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 7 (TAIR:AT5G49740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR