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GT15414

CSHL Arabidopsis genetrap mutant lines

Original: GT15414

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15414

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 241096 [Map]; Strand: w
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: -185; Region: promoter
    Flanking Genome Sequence: GT15414 - 5-prime edge
    TGCGGAATTT TTATTTTTAT TGTTTTATTT TCTTTCCCCG AACCAAAATC 
    ATCACCAAAA ATCCATAAAG TTTCCGGTTC TGACAACACG GCGGTAAAGT
    TGAAAAAGAT TTGGGCCGTA CCTATTCATT CTCGTGAATT TATTTTAACT
    TTGGGCTTGG TTTTTACGGA CATAGCGTTC CAAGACAAGT GTGATATTGC
    CACGGCCTTT TATTGCGGTA ACTAACGGCA CGAATGCTAA CCCGAAATCG
    TTCCAAACAA TAATTGCTTA CGTGGACATT TTAAAACATC TGTTCAATGT
    GATTGGTGAC TGACTTCAAT GAAAATTACA TTGCAACAAT GGTCAAGTAT
    CACAGAAAAT TACATTGCAA CAATCTCCAC CTTCATCTCT CTCGA

AT5G01630.1

Model type
Protein coding
Short Description
BRCA2-like B
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.
Computational Description
BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR