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GT15419

CSHL Arabidopsis genetrap mutant lines

Original: GT15419

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15419

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17713728 [Map]; Strand: c
      • AT5G44020.1 - [+] show detail - HAD superfamily, subfamily IIIB acid phosphatase
        Distance: 0; Region: intron2 (CDS)
      • AT5G44030.1 - [+] show detail - cellulose synthase A4
        Distance: -917; Region: promoter
    Flanking Genome Sequence: GT15419 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATATCT 
    AGCTAGTTCA TCTCACTCGA CAACTCGGGT TATGATTATG TTACATGCAT 
    TGGTCCATAT AAATCTATGA GCAATCAATA TAATTCGAGC ATTTTGGTAT 
    AACATAATGA GCCAAGTATA ACAAAATTAT CAAACCTATG CAGGGGAGAA 
    GATGATGAAA AGAAGAGTGT GAGCCAATAC AAAGCAGATT TGAGGACATG 
    GCTTACAAGT CTTGGGTACA GAGTTTGGGG AGTGATGGGT GCACAATGGA 
    ACAGCTTCTC TGGTTGTCCA GTTCCCAAGA GAACCTTCAA GCTCCCTAAC 
    TCCATCTACT ATGTCGCCTG GATCAAATCT TATTTACTAA CAAAACAATA 
    AGATCAGAGT TTCATTCTGA TTCTTGAGTC TTTTTTGTCT CTCTCCCTCT 
    TT

AT5G44020.1

Model type
Protein coding
Short Description
HAD superfamily, subfamily IIIB acid phosphatase
Computational Description
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT1G04040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G44030.1

Model type
Protein coding
Short Description
cellulose synthase A4
Curator Summary
Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.
Computational Description
cellulose synthase A4 (CESA4); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, defense response to bacterium, defense response to fungus, secondary cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 3263 Blast hits to 2832 proteins in 640 species: Archae - 9; Bacteria - 1071; Metazoa - 1; Fungi - 31; Plants - 2051; Viruses - 7; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR