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GT15425

CSHL Arabidopsis genetrap mutant lines

Original: GT15425

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15425

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30363995 [Map]; Strand: c
      • AT1G80800.1 - [+] show detail - pseudogene, 40S ribosomal protein S12 (RPS12B), similar to ribosomal protein ...
        Distance: -18; Region: promoter
    Flanking Genome Sequence: GT15425 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TAACTGTAAC CAACCTGATT ATGTATGTCA AGCTTGTTAA AGCTCTATGT 
    GCTGATCATA ACATCAATTT GCTTACCTTG GTGAATGGGC CGGTGTAAGT 
    CTTGTGTTTT CTCTGCATAT AGCTTGTTTA GTTTGTCATG TGATGCTCTT 
    TGTTGGGGTT TCGCCTTGAA ACTTAGATGC TTGTAAAATG ACCAATGTAT 
    GTGGTGACAG CTCTGCAAGA TCGATTCAGA AGGCAATGCT AGGAAAGTGG 
    TTGGATGTTC TTGTGTTGTA ATTAAGGTAA AGAGAGACTC CCTTATACTC 
    AAAAGCTACA TAACTTGATA TAGACTCTTG TTCTGTGTCT CGTCATCACA 
    CTTGTGGGTT TCTATGATTG AATGAATGCT TTTGCTTGTC TTAGGATTAC 
    GGAGAGGGAA CAACATCGTG AAGAAGCATC TTGAATCTCA CTAAATGCAA 
    GAGAAAGCAT TTCAATGCCA AATGCAAGAA GAATAGAGAT TATGTGCTTT 
    GTTTCCCCTT GTTGGAGGAT TGCTGGCGGA ATTTGTTTGG ATCCATAAGT 
    TATGTAAGGC TCTAGTCTTC CAAGACCCAT CACGATTTGG CTCTCTTTCA 
    GAACGATCTC GTTGCCCAAG TTTTGTTACA TTGGCAAACA TTTGACAGCT 
    GATAAAATTT AGCTTGTTTC TATAAATCAA GTTATTATTA TTCGTATCAT 
    CAAGTAACAA AATTGATCTT ACACTTTGAC GATTAATAAG GCGGGAACAT 
    GTTATCGAAA AAGTAAACTT TTTTTTTTAC ATTTATGGCT CTGCTTCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30363946 [Map]; Strand: c
      • AT1G80800.1 - [+] show detail - pseudogene, 40S ribosomal protein S12 (RPS12B), similar to ribosomal protein ...
        Distance: -67; Region: promoter
    Flanking Genome Sequence: GT15425 - 5-prime edge 
    CCTACTTTCT CCCTGGTTAC AGTCTTCAGC CACCATGAGC AGATGACTTC 
    CGGAATAGCA GCTGCCTCAG CAGCAGGAGG AACAACAGGA GCAGCCTCAT 
    CGCTTCAAAC AGCAAATTCT AGGACTCATT AGTCATTAGA ACAGAAAGGC 
    CAAAGTCACA GTGCAAATAA AACATGAACT TTTATTTAGT AGATAGAACA 
    AGGAACCGAT TTGCATTGTG AACATTATAT AAACACAAGA AGAGCAGTCA 
    CTAACAAAAT TAGCAAACAA GACAAAGAGA ACCTTAAGAT AGATGAATTA 
    ACAAATGCAT ATAAAATATA ACAAGTAGAA ATGAAAATCC CTAATCCATA 
    GCCAATTCAG CAGATTCAGA ACTAGAAATT GAGAGCAATG ATCCAAGAAA 
    ACAAGAAAAA CATGTTTCCT ATTTGAAGGC GTTTCGGATG AGTAAGAAAT 
    TCGATTTATC TGCGATTTCA CAACAAGTTC AACAATCGCA TAGAAACTCG 
    AAACGCACTA ATGACGCAGA ATTGAGTTTC AGAATCCACG AATTAACCTC 
    CGATGGCCTC TGGCTGTGCG AAGCAATTAG ATAGATACAC GTGTAATCTT 
    TTTTTATATA AAATAAACTC ACTGATTGTA ACTTATTGGG CCCGTTTAAA 
    AAGCAACAGT GGGCCTTTCA TTAGGCCCAC GAATTATTAG TCAGTACAGA 
    AATCGCTGAT ATCTGAAGTT AATTGCCTCA AATAAACGGT

AT1G80800.1

Model type
Pseudogene
Computational Description
pseudogene, 40S ribosomal protein S12 (RPS12B), similar to ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum vulgare); blastp match of 65% identity and 4.7e-12 P-value to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S ribosomal protein S12 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR