1. Home
  2. Mutant Lines
  3. GT15426

GT15426

CSHL Arabidopsis genetrap mutant lines

Original: GT15426

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15426

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30364002 [Map]; Strand: c
      • AT1G80800.1 - [+] show detail - pseudogene, 40S ribosomal protein S12 (RPS12B), similar to ribosomal protein ...
        Distance: -11; Region: promoter
    Flanking Genome Sequence: GT15426 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAACTGT 
    AACCAACCTG ATTATGTATG TCAAGCTTGT TAAAGCTCTA TGTGCTGATC 
    ATAACATCAA TTTGCTTACC TTGGTGAATG GGCCGGTGTA AGTCTTGTGT 
    TTTCTCTGCA TATAGCTTGT TTAGTTTGTC ATGTGATGCT CTTTGTTGGG 
    GTTTCGCCTT GAAACTTAGA TGCTTGTAAA ATGACCAATG TATGTGGTGA 
    CAGCTCTGCA AGATCGATTC AGAAGGCAAT GCTAGGAAAG TGGTTGGATG 
    TTCTTGTGTT GTAATTAAGG TAAAGAGAGA CTCCCTTATA CTCAAAAGCT 
    ACATAACTTG ATATAGACTC TTGTTCTGTG TCTCGTCATC ACACTTGTGG 
    GTTTCTATGA TTGAATGAAT GCTTTTGCTT GTCTTAGGAT TACGGAGAGG 
    GAACAACATC GTGAAGAAGC ATCTTGAATC TCACTAAATG CAAGAGAAAG 
    CATTTCAATG CCAAATGCAA GAAGAATAGA GATTATGTGC TTTGTTTCCC 
    CTTGTTGGAG GATTGCTGGC GGAATTTGTT TGGATCCATA AGTTATGTAA 
    GGCTCTAGTC TTCCAAGACC CATCACGATT TGGCTCTCTT TCAGAACGAT 
    CTCGTTGCCC AAGTTTTGTT ACATTGGCAA ACATTTGACA GCTGATAAAA 
    TTTAGCTTGT TTCTATAAAT CAAGTTATTA TTATTCGTAT CATCAAGTAA 
    CAAAATTGAT CTTACACTTT GACGATTAAT AAGGCGGGAA CATGTTATCG 
    AAAAAGTAAA CTTTTTTTTT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17864630 [Map]; Strand: c
      • AT1G48330.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 244; Region: intergenic
      • AT1G48340.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -1198; Region: intergenic
    Flanking Genome Sequence: GT15426 - 5-prime edge 
    AAAATTCCAA AAGATTTGGC AATCAATGAG CACAACTCTA GTGTCTCTGA 
    AAGGCTATTG GATAAGAGAG TGTGGATAAC ATTATCTCCC ATGAGACTTA 
    GAAATCCGTT ACTGAGATAA AGCAATCAAA GTTTTACAAG ACACATCTTG 
    TAATGAATTA TTACATTGTT AAGTTCCACT AGTTATATTT ATTTCGTATT 
    AAACCATTAT GGTTATAATT TCAACGTGAT TAGTTAACTA TTTTATTCTA 
    TGGTTCCGTA AACCGCTCCA ATAAACAAAA GTACACAAAT GAAACCGGAA 
    TTAAAAGCCA ACAACAACAT GAAAGGACTT CATTCATTTG TTCCAAACCG 
    AAATGAAAAA TCTCACCGTG AATTAGATAG ATCATCACAG GGATTAATAA 
    CATCCGAATC CAAATTAACT AGTCATCGGA TAAAAATTCA CTAAAATTCT 
    AAATTTAGAA AAGCCACGAC CACATAAAGA CAAGGAGATA GAAGAGAGAC 
    ATGACGGGCT TATACATTCC TATACACATA AAAGAGAGAA AATAAAAAGA 
    GAAATTTCGG ATTCCTTTCT CATTCTAATC AAGAAGAGAG G

AT1G48330.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G48340.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT1G80800.1

Model type
Pseudogene
Computational Description
pseudogene, 40S ribosomal protein S12 (RPS12B), similar to ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum vulgare); blastp match of 65% identity and 4.7e-12 P-value to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S ribosomal protein S12 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR