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GT15437

CSHL Arabidopsis genetrap mutant lines

Original: GT15437

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15437

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75574 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -185; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -196; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT15437 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATCT 
    CTGAGGCTAA CTAACAGGAA GGAAGCGGGA GAAGAGCAGC TGCAGAGTCG 
    CTCTTGTTCT AGCTGCTGCT GACTTTGGTG GACCAACCAA CTTAATATAA 
    TGGTTTGGGC CTTAGAATGG TTTGGGCCTA TACCGAGAGG CCCGGCTTAC 
    CCAGAAAGAA ATGCAGCAAT AGTCAATGCC ACTGCCTGGA ATTCGTCGAT 
    CGAGCGATAA GAAGAAGACT GGAATTTTTT TGAGGAGGAC TCTGCTCCAT 
    CGCCGCCCGC CCTGTAACCC ACCGGACTCA GTAAACTAGT CTGTAACACA 
    ATATCTTCTA TTTCAGATAA GATTTAGCTT GGAGAAGAGC AAGTTCCGAA 
    AATGGAGGGG CGTCGTGTAT AGATCCACCA CCCACAGGTT CGTAGATTCC 
    ATAACCTTGG ATTGTGTTTT CTTTTTGCTT TCCCAGCGAC AAATTCCTCC 
    GATTTTAGTG AACATGTCTC TGATTTTGGT GTCCTGTGGT GGATCTGCCG 
    GAGCAAGTCT TAAACTTGAC TTGGACTGTT TTTACTAGCT AATTCTGGGC 
    GCTATTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75633 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -244; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -255; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15437 - 5-prime edge 
    TTTCTCCCTG CTCAGAGATC CTCGTTCCCC GATAATGGAT TTGGGAAAAC 
    TGATCCAGCT GTCTGCGCTG CTGTGCCCAT TTCTTCTATC ATTACACTTT 
    AGAATCGCTG GGGCCTCCGC CCACATCTAC TCTTCCCAGC CCTTCCACGA 
    TGTCGGTAAT TCTCTCCTCC TCTACGGTGG CAGCGAGGGC ATCTTCGCCT 
    CTTCCCGATC TTTAATCAGG TATATTCTAT GGATTACATT TTCAACTCTT 
    TTGATGCTCT CTACTCTACT CTACTCATCC TCCCTCCTCA CTGCAGGTTT 
    GAGAACATCA CTCTCTGGAG GACAATTACC GGTAAGGGCC ACCGCAGCAA 
    TGGGTTAGTT CAAGCAGTGA TCTTTGAAGC CTCCGATCGT AACAATATCG 
    GTGGTTCAGC TTACGGAGGC CAAAGATCTA TTTGCTGCAC TCCAGATCTG 
    GCCAAGCTTC AAGGCTGTAA GCAGGGTGAG ATCATTAGGA TTCCTTCTCC 
    ACATGACCCT CAATGGCCTA TCCTCTTACC TGTCCGCTTT AAAGGAAAAC 
    GCTCGTCTGC TAAGATGGCA GACACTGAGA TTCTTTTCAC CAAGACTGGA 
    ATCTAT

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR