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GT15460

CSHL Arabidopsis genetrap mutant lines

Original: GT15460

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15460

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94718 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: -58; Region: promoter
    Flanking Genome Sequence: GT15460 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCCAGTTAG 
    AAGAAGCAGC GGAGATCTCT CTCCCTCTTT ATAGTTTACT TTTGACTTAC 
    AGTAGAGAGA GTTTAGAGTT TTGAATTTGG CTCCGATGAC GAATCGTCTT 
    CCTCCTTCGC TGTACGTTCC GCCTCACCAG CGCCTTGGTT CCGATTACGG 
    CTTCAATCCT GT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94779 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: -119; Region: promoter
    Flanking Genome Sequence: GT15460 - 5-prime edge 
    CTTTCTCCCT GCTTCTACAC TGAACTTGCA ACTATGCCAA TTTTACCTAA 
    TCGCCCTCCA AAAATTTTGT AAACTTAAAA GAAGAATTAC ACAATTTGGT 
    TTTGCAGTCA AACAGTAATC AGTCTTTATG AGAGGAAATA TAGATTTAAG 
    AGGATGTTTT CACGTTGCTC ACATACATAT ATGATATGAT CGTGACTCGT 
    GACTGTCTTT CTTTCTCAGA GACAAAACAA AAAAGGGAAA AAAAAAACAA 
    AAAACACCAA GGGCCCTAAA TCCTTATAAC AATCTCGAAA ATAAACAAAT 
    CAGAGGGGGA ACCCTTGGAA AAAAATTCTT TTC

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR