GT15463 - RIKEN Arabidopsis Genome Encyclopedia
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GT15463

CSHL Arabidopsis genetrap mutant lines

Original: GT15463

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15463

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 60886 [Map]; Strand: w
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: -1600; Region: intergenic
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -2524; Region: intergenic
    Flanking Genome Sequence: GT15463 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT TACACACACA 
    TATATCTATA GTATTCCAAC ATACCAAATA TTATATTAAT ATATCATGAA
    ACTTGAAAAT GTGTTGGTGT ATTGGTCCGA TTTTTAATTT GTCTTCAAGA
    TCAATTACCC ACCTCTCTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTG
    GGGGGGGGTT TTTTTTTTTT TTTAAAAGGG GGTTTTTTTG GGGGAAAAAT
    CCCGGGGGGT TTTTTTTATA GGGGGGGGGG GGGGGTTTTT TTTTTTTTTT
    AAAAAAAAAA AAAAACACCT TTTTTTTTTT TTTTTGGGGG GGGTTTTTTT
    TTTAAAAAAA AAAAAATTTC CCCGGGTTTT TTTTTTTTTT TTTTTTTAAA
    AAAAAAATTT TTCCAAAAAA AGGTTTTGGG GCCTTTTTTC CCCCCCCAAA
    AAATTTTTTA AAAAATTTTT TTTTTTTTTA AACCCCCCCC GGAAAAAAAA
    ATTTTGGGGG GGGGGCCCCC CAAAAAAATT TTTTTTTTTT TGGGGGAAAA
    AAAAAGGTTT TTTTTTTTTT CCCCCCCTTT GGGAAAATTT GGGGGGGAAA
    AAAAACCCCC CCCAAAGGGG TTTTTAAAAA TTTTTTTTTG TTTTTTTGGG
    GGGGGAAATT TTTTTCCCCC CCCAAAAAAA AAAAAAAAAA TTTTTTTTTT
    TTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68150 [Map]; Strand: w
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2671; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 1123; Region: intergenic
    Flanking Genome Sequence: GT15463 - 5-prime edge
    TCTACTTTCT CCAATGTGTG TTAACTTCGT GAGGGTGAAG TAAGTTACGT 
    GGTGAAAACA TGTTCTTCTC TCTCGACAAA AGCAACACAC CCAACCCCAC
    TCAATCGGAT AGCTAGGAGA AAATTTACAT TATCATACAC CCTTTATAAA
    ATGAAGAAGA TTTCAGCTAA TTTGTTCTCC TAAATCGGGG TTCGTATGAT
    GAACAGAATC GTGCTTTGCC ATAATTAGAG GAAGAAACAA AAAAGTCAGC
    TAAATATATT ACTCTTGCCA AACATTAATT TATATTGAAG GATGACGTGT
    TAGAGTTTGT ATGCATATAA CCATATATAA ATGATTGCGT CGTTCATTTT
    GTATAATATT TTAGGATAAT GACTAGTTAG ATTAGACAAA AATTGATCAA
    TTATTATTAG GAGATCGCAT GGGACTGATA AGGATAAAGA AAAATAGAGA
    AGATTTCTTC

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR