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GT15471

CSHL Arabidopsis genetrap mutant lines

Original: GT15471

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15471

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5701446 [Map]; Strand: c
      • AT2G13680.1 - [+] show detail - callose synthase 5
        Distance: 0; Region: exon27 (CDS)
    Flanking Genome Sequence: GT15471 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATCAAAG AGGTGGAGAG 
    CAACATATCA AAGAATTCCT TCCTTTCGAA TTTCAGAATG GCGCCTTTAC 
    CTGCTCTTTG TAGTAAATTT GTCGAGCTTG TTGGAATTTT GGTAAGTGAA 
    CAACATCCTT GTTTAATCAT TGGTATTGAT TTAAGGCTGG TTATTTTTTA 
    TGCCAGAGAC AGGGCAATCC CCTAATTTAG GTCTGTTTAT TATTAATGTT 
    GTGCTGGAAG GGATAATACT TGTGAAATGT TATCTAGGGA ACTAAATAGT 
    TATGTATACT TATGATGCTG CAGAAAAATG CGGACCCAGC GAAAAGAGAC 
    ACAGTGGTGC TATTGTTGCA AGATATGTTA GAAGTAGTGA CTCGAGATAT 
    GATGCAAAAT GAAAACCGGT TAGTGAGCTA TAGAGAACTC GAAAGTTCTT 
    TTTATGTAGA TGTATATAGT AACCACACAA ACAAGATTTG ACATGGGTGG 
    CACCTTTCTT CAGTGAATTG GTAGAACTTG GGCATACTAA CAAGGAATCC 
    GGAAGGCAAC TCTTTGCTGG TACTGACGCA AAGCCTGCTA TACTGTTTCC 
    TCCAGTGGCA ACAGCTCAAT GGCATGAACA GGTAAAATCT CAAAACAAAT 
    TATAAGGCTA ATTCTTAGAG ATACTCTGTA TATAATGATC TAATTCATTG 
    TTGTAGATAA GTCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5701348 [Map]; Strand: c
      • AT2G13680.1 - [+] show detail - callose synthase 5
        Distance: 0; Region: intron26 (CDS)
    Flanking Genome Sequence: GT15471 - 5-prime edge 
    CCAATAATCC TGTGACATTA TATCTTTTCT TAGTATCAAT TAAATGAATG 
    AAAACTCAAT AGAGGGACTG AAATTGCAGG TTGGAGCACA TATATATGTG 
    AAAGGTTAAG AAAACTATTT TATTCTCAAA ACAGAAGAAT GTTGACGCAC 
    TTAAAAATGC CACCTTAGGA GGAGAAATGT TACTACGATA CGTCAGAAAA 
    TCAAGTAGAG ACATGGTAGA GAACATCTAT TATCAAAACT AATAAGACAG 
    CCAGTAGCTT CAACAGAAGA GAAAAGTTGG AGTGCTGGTT TCCTTATAGA 
    TTCTTAATGA TTTATAAAGT GCTTCATAAA TCATAATCAA GAACT

AT2G13680.1

Model type
Protein coding
Short Description
callose synthase 5
Curator Summary
Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.
Computational Description
callose synthase 5 (CALS5); FUNCTIONS IN: 1,3-beta-glucan synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440), Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 12 (TAIR:AT5G13000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR