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GT15475

CSHL Arabidopsis genetrap mutant lines

Original: GT15475

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15475

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30342152 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: -242; Region: promoter
    Flanking Genome Sequence: GT15475 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTACT CCAAAAGATA TCCAAAACTT 
    GGAAATTAAT TTTATTTCCT CTTTAATTTC TCCATAATTC GAAAAATTGA 
    TTTTATTTCC TAAAGTTTTC TCATTAATTG TTTGTTACAC TCCACAACGC 
    TTTTTTTATT TTCTCCATAA TTTGGAATTG ATTTTATTTC CTAAAATTTA 
    ACATTAATAT ATTTGCTCCA CTAGTCACGA CTAGTACATA TAGACCTCGT 
    CTCTGCAACG CTTCATCTTT TACTTGCTCG TCTTCTCTGC GAAAATGGCA 
    GCGAGAAACA AACAAAAGAA ACGCGCTGAG CCAGAGTCAG ATCTGTGCTT 
    CGCTGGCAAA CCAATGTCTG TTGTGGAGTC GACGATTCGA TGGCCTCATC 
    GCTACCAATC CAAGAAAACA AAGCTCCAAG CTCCGACCAA AAAACCTGCA 
    AATAAGGGGT ATAACTTTAC GGGGTTTGTC TCTTTTATGA TTTTGTTGCT 
    TAGCTTCTGT TTGCTGATTT TGTTTTACAG TGGCAAAAAA GAAGATGAAG 
    AGATAATAAA GCAAGCTAAA TGCCACTTTG ACAAAGCTTT GGTTGATGGA 
    GTTCTCATCA ACCTAAACGA CGATGTCTAT GTCACGGTAT CGTTTTTGTC 
    AATCTGTGTT TACATTTTAA GTTGCTACGC TTTCTGTTTT CTTGAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30342075 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: -319; Region: promoter
    Flanking Genome Sequence: GT15475 - 5-prime edge 
    CTTTCTCCCT GTTTTGGAGT GATCGGGAGA ATCTCAACTC CGAGCGCATC 
    TCTAATTACC TTTAGCTCCT CGTTATTTTG GGTTATTTCG ATTTTTACCT 
    CATTCTATTG ATCTTAATGG GCCTAATATA AGGGCCCATA GAAAGTTATG 
    CCGTGTTCGA CGTTGATGAG GTATTAGTGT AGTACATGAT TCTCGGGACT 
    AAAAGTCATT CTTCTTTTTC TTAATTTTCG CAAGAGGTAG TAGGTTGATG 
    AGTTGCAAGA TAATTATTGA AGTTATGTTC CCTATCTCTT TGGAACAAAC 
    CCACGTTTCC ATTTCTCTCA ATGTTTCCGA GTTATCTAGT GTAGCAGTTA 
    GCGACTTTGT TATAGTTAAA TAGATAACCA AACAACGAAA TAAAAGCATG 
    CATACTCGTT TTTTTTCTAA ATAAAAAGTG TCAATTCTTT CTTGTGTGTT 
    TTATCATTTT TAATTACTTG TAGACACATC CCGTTGTTAA ATTACATGCA 
    AATTGTGTAA ACCGAAGAAT TTTATGATTG ATCAAATCAA ATATGGATGA 
    TTATTAAGAA TGTAGCTTTA GACGTTCTAT TATTCATGGA CATTCATATT 
    TTTTTGATAT TGAAGAATGA GAGGGTGGTC CATAAACTTT TGTTGTGGAG 
    GTAGGACCGA CAAGGTAATC TAGGAGGAGA TATATTGTCG TCGAAATTGA 
    TTAGACAAAG CAAAATAAAA ACAAAATGCA TCACCTCATA AGTCACTAGC 
    TACGATGAAA GCAAAAAATG

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR