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GT15478

CSHL Arabidopsis genetrap mutant lines

Original: GT15478

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15478

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19473784 [Map]; Strand: c
      • AT2G47450.1 - [+] show detail - chloroplast signal recognition particle component (CAO)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15478 - 3-prime edge
    ACGGTAGAGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGATGG 
    GAAGACCATC GAGTATCTTG TCAAATGGAC TGATATGTCT GATGCCACTT
    GGGAGCCTCA GGACAATGTC GACTCTACTC TTGTTCTACT CTACCAACAA
    CAACAACCAA TGAATGAATG ATTGATTTTG ATGATTACAT TCTTCTCAAT
    TTGCTTCTTT CTCATATGTG TTGGT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19473679 [Map]; Strand: c
      • AT2G47450.1 - [+] show detail - chloroplast signal recognition particle component (CAO)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15478 - 5-prime edge
    TCTCCGCTAC AGCGTACTCC AGCCCATCCT CGTAGTCCTT AGCCACATCT 
    TCCGCCACGT GTACACCTTT CACCCACTCG CAATCTCCAC CGTCCTTCCA
    TCTGACCAGA TATTCAACGT CTTTGCCTTT CCCTCGTTTC TCTACGATC

AT2G47450.1

Model type
Protein coding
Short Description
chloroplast signal recognition particle component (CAO)
Curator Summary
A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.
Computational Description
CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing protein 2 (TAIR:AT4G35450.5); Has 25373 Blast hits to 13489 proteins in 848 species: Archae - 87; Bacteria - 2575; Metazoa - 11620; Fungi - 2006; Plants - 1049; Viruses - 137; Other Eukaryotes - 7899 (source: NCBI BLink).
Link
InterPro Scan - TAIR