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GT15512

CSHL Arabidopsis genetrap mutant lines

Original: GT15512

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15512

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10329181 [Map]; Strand: w
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: 0; Region: intron2 (NonCoding)
    Flanking Genome Sequence: GT15512 - 3-prime edge
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTAGTAATTA TACACCTTAC ATTTATGTAA GATTATGAAT TGAGTATATT
    ATAATCTTAG GAATTTGAGA TTTGTATATT TCTAGAACTA TAATTTGCTT
    TCAAATAATG TTTTGTTTGG GGACGGAAAA TAAACAGGCG ATTGCGACGT
    TTATGGAGAG AGCGAGAGGC GGGCGGGTGA GGTTTGAGGC GGAGAGGGTG
    GTGATGAGCG GAGGAGCCAC CGGAGCAAAT GAGACGATCA TGTTCTGTCT
    TGCTGATCCC GGCGACGCTT TTCTCGTCCC TACTCCTTAT TATGCTGCGT
    ACGTATATAT ACACACTTTA CTAGTATTCA AATAAATATT ATTTTGGTCA
    TTAATAATTA AAAAGACACA TTAATTAGGG ATTTTGATGT TATGAATTAG
    AATAAGTAAA CATTATACTA TATTAAAATA AAAGTAATCG AAAAGGGCAA
    AAGTTCTAAT GATTTCATAA TTACATAGGT CAAAAAACAA AAGACTCTTT
    TGATAATGGG TTTTCACTTT TCAGAATTAT TTGTGAAATA TACCTCATTT
    GATTGATTCA ATATTTTAAT TTGGTAAGCA ACCCCGTCCA CACAAGTTAC
    AACTATGATC AAATTGTCGA TTGACTCTTC ACAAAAGTCA AACCATTAAT
    AACACTTGCT TGACTTGCTC TCTTCAGTAC TAATTATACT GGGTTTACTA
    AAATTCCAGA TT

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR