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GT15513

CSHL Arabidopsis genetrap mutant lines

Original: GT15513

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15513

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19639207 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -529; Region: promoter
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT15513 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCTGG 
    ATGCATACAA TCCTTCCCAA CAAAATATGC TGCTTGTATT TATTCACATC
    TCTCTCTCAA GTATCCTATT TTCCCATAAC TCTTTTACTC GCTTCAGGTC
    GTTGGAAATC ATGTCCATGC TTTAACATCA TTCCTGCGAC TTGATTAACC
    TTATGCTCCT GTCCATGCGT TGCTGCGTAT ACTCTAAGCA GAATACAAAG
    CGTCTTCTTG GACCGGCTTA TTTTAAAGCT TTCCATTTCA GAGAGGACGT
    TTTCCATCTC TTTAAAACGC TTTTGAGATC CATACATGAT CATTAAGCCA
    TGGAACATAG ACCTGCTCAT TTTCCATCCA GCAGAGTTTG CACGCTGCAC
    GAATTTGGCA AGCTTATCAA CCGCATTGCA CCTGAAGTAA CTAGCCACTA
    TTGATCTCAT AATACCATCT GTCTCTATCT GGAGTCCTTT TGTAATAGCC
    TGGTCTATGA AATTCTCCAT GGCATGTAGA TTATCATCCT TAGCATAGAC
    CTGCATCAAG AGCAAATACA ACCAAGGCTT GTAACTTTTC TTGGGGATAA
    GTTTGGATAA AGTCTTGATT TTTCTGATCC TATCCTTGTG ACAACTCCTG
    TAGTATGCGC AAATCATGGA CTCGATTAAC TTAATCTCAT TCCTGTCAAC
    GTGACGCTTG ACGGCTTGAT ACATG
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19639141 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -463; Region: promoter
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT15513 - 5-prime edge
    TACTTTCTGC AGGGATTCGA TTTGAACCCT ATAGCATCAA GGAATCAAAC 
    CATTGAAGCA GAAATGTCTC CGTTGGCGTA TAGCATCCAT GTGTCTTTGA
    TTGTAACATT GTAAGTTGCT CTTTTGCGCA TTACTTCTGG ATATACATGA
    TGAATAGTTT CGTACTCTGT GGTTCTTTCA GTATACAAAA CTTCTTCCTT
    ACTTGATCAT TCTCCAATTT GCCTGATATA AATCAATCCA CATGCATTAT
    GTGTTAAGCA CAAGATTGAT GAATCACCTT TCCTTGTGGA TGAATCGAGG
    AATTCGGTTT TTCTTTTCAG AGAAATAAGG ATTGAGAAAC TAAAAAAATC
    AGAAGAAGAA AGGAAAGGAG AGAAGAGATA AATTCGTTTA GTTTGTCCAA
    GTTAAATACG AAGGTTAAGT AAGGGCTTCA GATGCCAACA AATTGGTAGG
    CCCAATAACA TAATAAACGA GGCCCAAAAA CTTCATTTGG ATACTTACTT
    ATCAAATGTC TTCTTCGCCA TTCTCTGCTT AAACCCTAAA CCAGCC

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR