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Mutant Lines
GT15526

GT15526

CSHL Arabidopsis genetrap mutant lines

Original: GT15526

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15526

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Not mapped

TTACCGACGT TACCGACCGT TTTATCCCTA TATACACATT CCACCCGACC 
GGATCGAATC GGTTTATGAT TACCGCATTT ATACCGTTCG TTTTCGTTAC 
CGGTATATCC CGTTTTCGTT GCCGTCCCGC AAGTTAAATA TGAAAATGAA 
AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATAT 
ACACATTCTA CCCGACCGGA TCGAATCGGT TTATTATCAT CGCTCGACCA 
CCGTTCGTTT TCGTTACCGG AATATCCCGT TTTCGTTGCC GCCCCGCAAG 
TTAAATATGA AAATGAAAC

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 10861174 [Map]; Strand: c
  - AT5G28830.1 - [+] show detail - calcium-binding EF hand family protein
    Distance: 2506; Region: intergenic
  - AT5G28840.1 - [+] show detail - GDP-D-mannose 3',5'-epimerase
    Distance: 999; Region: intergenic
Flanking Genome Sequence: GT15526 - 3-prime edge
```
ATGTCTGACA GTGTTGTGGA AGGATACAGA TTTAGAGAAT ATATTCTTCT 
TATTGATCAT AAACATGTGT ACAAAGTATA TATAGAGAGG AGATTGTCGA 
GATAAACCTA ACCGACTATA CATGTCAATA TACAAACTCA CAGAGCCCAT 
ATAATCTAAC TTAGCCCACT AAAGGAGAGT AAAGTGAGGT GTAGGTGTCG 
GTGGAAACTA ATTCCTCTCT AAAAATCTGG AGAAAT
```
5 prime edge [+] show sequence
1. Chromosome: 2; Position: 12760988 [Map]; Strand: w
  - AT2G29940.1 - [+] show detail - pleiotropic drug resistance 3
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: GT15526 - 5-prime edge
```
TCATCCTACT TTCTCCCTGA TACAAGTACT AATGTTTTTT GCTACTTTTG 
AAGGATGACT TTGTTGTTAG GACCACCGGG TTCCGGAAAT CGACGTTGCT 
TCTTGCTCTT GCAGGGAAGC TTGATAAGAG TTTAAAGGTT AGTTGATCCG 
TGAAGTTATT AACTATGTTC TCCTCACTCG A
```

AT2G29940.1

Model type: Protein coding
Short Description: pleiotropic drug resistance 3
Computational Description: pleiotropic drug resistance 3 (PDR3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 12 (TAIR:AT1G15520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28830.1

Model type: Protein coding
Short Description: calcium-binding EF hand family protein
Computational Description: calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G38810.2); Has 259 Blast hits to 210 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28840.1

Model type: Protein coding
Short Description: GDP-D-mannose 3',5'-epimerase
Curator Summary: Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.
Computational Description: "GDP-D-mannose 3',5'-epimerase" (GME); FUNCTIONS IN: NAD or NADH binding, GDP-mannose 3,5-epimerase activity, catalytic activity; INVOLVED IN: L-ascorbic acid biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 30173 Blast hits to 30172 proteins in 2803 species: Archae - 688; Bacteria - 17773; Metazoa - 351; Fungi - 177; Plants - 999; Viruses - 17; Other Eukaryotes - 10168 (source: NCBI BLink).
Link: InterPro Scan - TAIR