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GT15539

CSHL Arabidopsis genetrap mutant lines

Original: GT15539

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15539

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17506256 [Map]; Strand: w
      • AT2G41930.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 3572; Region: intergenic
      • AT2G41940.1 - [+] show detail - zinc finger protein 8
        Distance: -1253; Region: intergenic
    Flanking Genome Sequence: GT15539 - 3-prime edge 
    TTACCGACGT TACCGACCGT TTTCTCCCTA TATGTATTCT CTTTTTGTTC 
    GTCTACACTA AATTTTTTGA TATTTTGTAA GATAATTAAA TTTTAAATCC 
    CCATTAATTT TGATTATATA TATTCCCTGA TTATGTCACA CAAATAATGT 
    ATATGTTGCT AATGTCAAGC TGGAATAAGG ACTATAAAAC TCATTAATCC 
    ATAAATTAAT CTGACCTTTT TCATCTCACT CGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17506331 [Map]; Strand: w
      • AT2G41930.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 3647; Region: intergenic
      • AT2G41940.1 - [+] show detail - zinc finger protein 8
        Distance: -1178; Region: intergenic
    Flanking Genome Sequence: GT15539 - 5-prime edge 
    ACTTTCTCCC TGAATAATAT ATATATATAG TTCATTTGAA GAAGACATGT 
    ATATGATCGA TCCGAGTTGA TAAGTATTAA CAGATTACAT ACATATTGAT 
    AAGATGATGT GATCTCATCG ATTAAGGTTC AATCTTTTAA ATTGGTTAAC 
    TATCTGGTGA TGACATGTCA ACTAGTCGAT TATGAGCATC ATTAATGATC 
    ATGAACATGG ACCACCTCTC TCTCTCTGTA AGATTATCTT TGCATCAAAG 
    AGACAAAACA TCCAAGAGAC TAAAAGTATG GTCCTTGAGA GAGAAGAAGT 
    CTCTTTAATT AGGTCTTTCT ATTTCTCTCT CTCTCTATTA GTAGAAAAAT 
    CCATGTACTT ATACGTAGAC ATAATAACCA AATAGGTCCG TGATGTTAAA 
    GAGTACACAC CTAACTTCAC CTTGCTAATG ATCTCTTACC TACAAACTCT 
    CACTGTT

AT2G41930.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G42550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41940.1

Model type
Protein coding
Short Description
zinc finger protein 8
Curator Summary
Encodes a zinc finger protein containing only a single zinc finger.
Computational Description
zinc finger protein 8 (ZFP8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G58070.1); Has 1033 Blast hits to 1031 proteins in 54 species: Archae - 0; Bacteria - 9; Metazoa - 26; Fungi - 10; Plants - 958; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR