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GT15540

CSHL Arabidopsis genetrap mutant lines

Original: GT15540

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15540

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17506258 [Map]; Strand: w
      • AT2G41930.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 3574; Region: intergenic
      • AT2G41940.1 - [+] show detail - zinc finger protein 8
        Distance: -1251; Region: intergenic
    Flanking Genome Sequence: GT15540 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCA TATATGTATT CTCTTTTTGT 
    TCGTCTACAC TAAATTTTTT GATATTTTGT AAGAATAATT AAATTTTAAA 
    TCCCATTAAT TTTGATTATA TATATTCCCT GATTATGTCA CACAAATAAT 
    GTATATGTTG CTAATGTCAA GCTGGAATAA GGACTATAAA ACTCATTAAT 
    CCATAAATTA ATCTGACCTT TTTCATCTCA CTCGACAAAA ACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21870642 [Map]; Strand: c
      • AT3G59140.1 - [+] show detail - multidrug resistance-associated protein 14
        Distance: -1941; Region: intergenic
      • AT3G59150.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: -2064; Region: intergenic
    Flanking Genome Sequence: GT15540 - 5-prime edge 
    CTTTCTCCCT GTCTAAAAAG AAGTCACCAA CGAAAAGCTA AGGTTGGGAA 
    AAAACGACAG AAAGTAGATT CGTTAAATAT GGTGGAAAAA ATAGATTTTG 
    TAAAGAAGTT TTATAGTTCA ATTTCAATTT GGATCCGACT TCTGTGGGAG 
    TCACTCTCAC ATTGTCAGTG AATTATTATA CCATGCTTAC ATATTATGCG 
    ATTGAGGTCC CAAAACAAAC ATATAACGCG AATCTGAATT TATAAAAGTA 
    TATCCTATTA CATAGTGTAT TGTTGCTTTC GTACTTTATG CCTTCATTTT 
    ATAAATAAAT GCGAATTGAG ATGCAAACAA GAACATATCG CCAAATCATG 
    TTAAAGAAAA AACATCTCGC CAATCTCTAA TTTATTCACA ATAAGATTAA 
    CGGTCTATAA CCACACCATT TTTAAAAAAC TGACTACTAA ACCACCCACA 
    TTTTCATTTT TTTGTATAAC TATACAAACT ATCATTTAAA CAGTTTTAGT 
    TAAATAAAAG TTAACTCAAT TTTGAGTTGA TGGATATTAT ACTCCCTAAG 
    TTTCACAAAG AATGTAATTT TCACATTTTA TATTTGTTTC ACAAAAAATG 
    TTGTTTTATA TTTCCAACGC AAAATATAAT TGTGAATAAA AAATCTATTT 
    TGACTCTATT TTTTTAATAT ATTAACAAGA GAGATCATTT TTTTAGTGTA 
    TTAATAAGGA GTATTGTAGA ATTTTTACTA GTTTTCATTT ATGTATAAAA 
    GTGTAGAATG ACATTATTGT GAAAACTACT

AT2G41930.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G42550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41940.1

Model type
Protein coding
Short Description
zinc finger protein 8
Curator Summary
Encodes a zinc finger protein containing only a single zinc finger.
Computational Description
zinc finger protein 8 (ZFP8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G58070.1); Has 1033 Blast hits to 1031 proteins in 54 species: Archae - 0; Bacteria - 9; Metazoa - 26; Fungi - 10; Plants - 958; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59140.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 14
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 14 (MRP14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 6 (TAIR:AT3G21250.2); Has 673798 Blast hits to 360971 proteins in 4075 species: Archae - 12279; Bacteria - 544381; Metazoa - 13093; Fungi - 8967; Plants - 6941; Viruses - 21; Other Eukaryotes - 88116 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59150.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.2); Has 1506 Blast hits to 1463 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR