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GT15545

CSHL Arabidopsis genetrap mutant lines

Original: GT15545

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15545

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16525237 [Map]; Strand: w
      • AT2G39630.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -550; Region: promoter
      • AT2G39630.2 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -550; Region: promoter
      • AT2G39640.1 - [+] show detail - glycosyl hydrolase family 17 protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15545 - 3-prime edge
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACGTGGT 
    AGTGGCATCG TCACTACTAC CAACCCAAGC ACTAGCACAT GCGTCGTACC
    AGCATCAGTA ACGCTCTGAA TTTTTAAAAA GCAACTACAG AAACTGAAAA
    AAATCAATAA AACAAGATCC TTTTATTTCA TTATAAGAAC AATCATTTTT
    CGTTGTTTTT ATGTTGTATC TTTAATTTTC ATTATATTTT TCAAATATTT
    ATGTAGACAT GTACATGAAA AAGAAAAATT ATATACATAT GGTAAAATAT
    CCAAATTATA CTTTGTCATT TCCATCTATT CATTTTCTAG TTATTCATAT
    ATATAATCTG CCATTTCCAA ATCATAATAT TGATCAGTTT TATTCTTTAA
    CATATTTTAA TCCACATTTT TTTCTGTATA TTGAAAATTG TTAATCAATA
    AAACTTTATT TTATTATAAT TTGAGATTTT GTTCAACATT AACACTACCA
    AACGAACCGG AACCTAAATG GCTAAACCAA AAGTCAAACC GAAATGGCTA
    TCTCAAATTG AGCTCTGCTG CATTTTAATC TGAAATTAGG GATTGAACCA
    TCTTCACGGA TCAATCATTA GACTTTAGCT TTTCTTGCTT ATTCTTCACG
    GATTGGTTTC GATCTCT

AT2G39630.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
Encodes a putative dolichyl-phosphate β-glucosyltransferase.
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT1G20575.1); Has 14679 Blast hits to 14665 proteins in 2386 species: Archae - 662; Bacteria - 10857; Metazoa - 271; Fungi - 260; Plants - 99; Viruses - 22; Other Eukaryotes - 2508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39630.2

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
Encodes a putative dolichyl-phosphate β-glucosyltransferase.
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT1G20575.1); Has 13322 Blast hits to 13314 proteins in 2299 species: Archae - 543; Bacteria - 9870; Metazoa - 265; Fungi - 258; Plants - 96; Viruses - 22; Other Eukaryotes - 2268 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39640.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 17 protein
Computational Description
glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 4106 Blast hits to 2815 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 85; Plants - 4010; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR