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GT15552

CSHL Arabidopsis genetrap mutant lines

Original: GT15552

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15552

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9459850 [Map]; Strand: c
      • AT1G27210.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -1824; Region: intergenic
      • AT1G27213.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 185; Region: intergenic
    Flanking Genome Sequence: GT15552 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    TCCAAACGAA TAGTGATTCA ATCTGCAACA AATAAATGAA GAGAAAAACA 
    AACTGAAAAT ATTAGCCCTA GCTAATTTGG ATACATCCTT TTATCTCTAA 
    ACTTAAAATC CATCCAAATT AAGAGAACTT TCTTCATCAT GGGGGATTAA 
    TTTTAGGAGT CATGAAAACT CGATGAAAAA AAAAAGATTA GACTGAGATT 
    ATGTTTGAAA GCAAAATATC ATTATCATGA ACAATACAGT TATTGTCAAG 
    ACGGCAACGT TTGTAGCATG TTGGGAAATA CCCTCCATGT GACTTTTGTT 
    CGTCCCGACC ATTCTTTGAT GGTTTCATTC TTTCTGGCAT TTTCCCGCCC 
    TCGCCTTGTT CTTTTCGTTT ATAGTTAAAT AATTGTTACT CGAATGACCA 
    AAACTGAATC GGTACAAGAT CATACTCGGG GGTATCAAAC CGGGTCTTGC 
    AACAAGAAGT TTGCTGGTGT AATATTAATT AAACATCAAT CAAGATCATG 
    TAAATAGTTC AACAATGAAG GCCCAGCTAA TTAAGGTGGC ATGGGTATAT 
    ATTAAACACT TTTGTTTCTA TTACGACATG TAATTAACTT CAAATCAATT 
    GCCTCCATCA AGGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9459853 [Map]; Strand: c
      • AT1G27210.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -1827; Region: intergenic
      • AT1G27213.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 182; Region: intergenic
    Flanking Genome Sequence: GT15552 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTCC 
    AAACGAATAG TGATTCAATC TGCAACAAAT AAATGAAGAG AAAAACAAAC 
    TGAAAATATT AGCCCTAGCT AATTTGGATA CATCCTTTTA TCTCTAAACT 
    TAAAATCCAT CCAAATTAAG AGAACTTTCT TCATCATGGG GGATTAATTT 
    TAGGAGTCAT GAAAACTCGA TGAAAAAAAA AAGATTAGAC TGAGATTATG 
    TTTGAAAGCA AAATATCATT ATCATGAACA ATACAGTTAT TGTCAAGACG 
    GCGACGTTTG TAGCAGGTTG GGAAATACCC TCCAGGGGAC TTTTGTTCGC 
    CCCGACCATT CTTTGAGGGT TTCATTCTTT CGGGCATTTT CCCGCCCTCG 
    CCTGGTTCTT TTCGTTAATA GTTAAAAAAT TGTTACTCGA AGGACCAAAA 
    CTGAATCGGT ACAAGATCAT ACTCGGGGGT ATCAAACCGG GTCTTGCGAC 
    AAGAAGTTTG CTGGGGTAAT ATTAATTAAA CATCAATCAA GATCATGTAA 
    ATAGTTCAAC AATGAAGGCC CAGCTAATTA AGGGGGCATG GGTATATATT 
    AAACACTTTT GTTTCTATTA CGACATGTAA TTAACTTCAA ATCAATTGCC 
    TCCATCAAGG CT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15552 - 5-prime edge 
    TACGTTCGAA ATATCATTTG CTTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9459744 [Map]; Strand: c
      • AT1G27210.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -1718; Region: intergenic
      • AT1G27213.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 291; Region: intergenic
    Flanking Genome Sequence: GT15552 - 5-prime edge 
    AAACGTAGAT CATAAGAAAC CATACCTTGC TAATGCATAA AGCTATTTAC 
    GTTCGAAATA TCATTTGCT

AT1G27210.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G59850.1); Has 516 Blast hits to 439 proteins in 115 species: Archae - 2; Bacteria - 40; Metazoa - 93; Fungi - 74; Plants - 195; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27213.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR