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GT15569

CSHL Arabidopsis genetrap mutant lines

Original: GT15569

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15569

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20699175 [Map]; Strand: w
      • AT5G50860.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -2136; Region: intergenic
      • AT5G50870.2 - [+] show detail - ubiquitin-conjugating enzyme 27
        Distance: 258; Region: intergenic
    Flanking Genome Sequence: GT15569 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAAGTGCAG 
    AGAGATTGAG AGAGAGAAAG GTTGGACTAT ACTTTTTCTG AAATTTTGTA 
    CCGAATTCTT TTTCCCAAAA GTGCAAGTAA TCGTTATTAA GTTGTAATCT 
    TATTTTGAAA TCTCACTAAA AGCTAATCAA GTTTTGATTT GGGGATTTTG 
    TCTCTTTTCA ATTGACAAAA CGATGTTGTT TAGTGTACAA TAAACTTATG 
    CCGTTTAGCC ATAACATAGA TAACTAACGG GAATTTAACA CTTTAAAGAT 
    TTTCTGTTAG TATACTAAAC GTCATGTCTA AATTAGTTGG TCAACCAAAC 
    TTGTTATCTA AACTTAAAGT CAACCAATAC TTTACGATTT ATTTGTGTTC 
    CTCGTAATTC ATGATTCGAT CGTCTGAAAT TTGAAAGTTA ATGATTTTCT 
    TTTGACATTT TTTCTAACAA CTTTTTTGGT TTC

AT5G50860.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: N-terminal protein myristoylation, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54610.3); Has 127216 Blast hits to 125539 proteins in 4407 species: Archae - 96; Bacteria - 14251; Metazoa - 47558; Fungi - 13008; Plants - 31428; Viruses - 439; Other Eukaryotes - 20436 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G50870.2

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 27
Computational Description
ubiquitin-conjugating enzyme 27 (UBC27); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.4).
Link
InterPro Scan - TAIR