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GT15574

CSHL Arabidopsis genetrap mutant lines

Original: GT15574

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15574

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18529440 [Map]; Strand: c
      • AT4G39952.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15574 - 5-prime edge 
    TACTTTCTCC CTGATATCTC ACATTCCAAC AAACGGCATC CTTCTGATTT 
    CCAGCATCAA ACAGTTCTCG TGACTTTTCA AGGTGGCCAC ATTTCGCGTA 
    CATGTCAATG AGAGCAGCTG AAAGAGAAAG ATTCATCTCG TGCTCTGATT 
    CAGTGATGTA CCGATGAATG CTCTGTCCTC TCTCCAGAGA GCCAGTATTG 
    GCACAAGCCA TAAGCAGAGT CACCAAAGTT ATTGAGCTGG GTTTGAAATT 
    CTCAGAAACC ATTCTATCGA ACAATGCAAT GGCTTTTTCG GATTGCTCAC 
    AGTGAACATA AGACGCAATC ATTGCGTTCC AAGTGATAAC GTTAGTATCT 
    GCTTCACAAA ACATCCTCCA AGCTACAGTC AAGTCTCCCA TTTTTCCATA 
    CAAATCAATG AGGGAATTGA CCACTGAGAT GGTAAGATCC AAGCTAGTTT 
    TGACAACATA GCAATGCAAC GACTTCCCTA GTAGCACCGC TCCTATGTGG 
    GAACAAGAAG ATATGACAGA GGTTGCGCTG GCAAAGTCGA TTTCAATTCC 
    AAGATTCTGA ATTTT

AT4G39952.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G03580.1); Has 47712 Blast hits to 13890 proteins in 262 species: Archae - 2; Bacteria - 17; Metazoa - 157; Fungi - 156; Plants - 46708; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).
Link
InterPro Scan - TAIR