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GT15581

CSHL Arabidopsis genetrap mutant lines

Original: GT15581

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15581

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10861101 [Map]; Strand: c
      • AT5G28830.1 - [+] show detail - calcium-binding EF hand family protein
        Distance: 2433; Region: intergenic
      • AT5G28840.1 - [+] show detail - GDP-D-mannose 3',5'-epimerase
        Distance: 1072; Region: intergenic
    Flanking Genome Sequence: GT15581 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTAT CGTCAATGTC 
    GCAAAATCTT GTCCAAAAGA GAGATGTCTG AGAGTGTTGT GGAAGGATGT 
    ACATTTAGAG AATATATTCT TCTTATTGAT CAAAAACATG TGTACAAAGT 
    ATATATAGAG AGGAGATTGT CGAGATAAAC CTAACCGACT ATACATGTTA 
    ATATACCAAC TCACAAAGCC CGTATAATCT AACTTAGCCC ACTAAAGGAG 
    AGTAAAGTGA GGTGTAGGTG TTGGTGGAAA CTAATTCATC TCTACCAACC 
    AGGAGA

AT5G28830.1

Model type
Protein coding
Short Description
calcium-binding EF hand family protein
Computational Description
calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G38810.2); Has 259 Blast hits to 210 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28840.1

Model type
Protein coding
Short Description
GDP-D-mannose 3',5'-epimerase
Curator Summary
Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.
Computational Description
"GDP-D-mannose 3',5'-epimerase" (GME); FUNCTIONS IN: NAD or NADH binding, GDP-mannose 3,5-epimerase activity, catalytic activity; INVOLVED IN: L-ascorbic acid biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 30173 Blast hits to 30172 proteins in 2803 species: Archae - 688; Bacteria - 17773; Metazoa - 351; Fungi - 177; Plants - 999; Viruses - 17; Other Eukaryotes - 10168 (source: NCBI BLink).
Link
InterPro Scan - TAIR