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GT15582

CSHL Arabidopsis genetrap mutant lines

Original: GT15582

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15582

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23372034 [Map]; Strand: w
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: 0; Region: intron1 (CDS)
      • AT3G63250.2 - [+] show detail - homocysteine methyltransferase 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT15582 - 3-prime edge 
    CTACTCATTA TTTGCTATTT CCAGATTCAG TTCCATGGTT TCTTTTGCAT 
    TCTGAGTCGG GAAACAGGGT TAAGATTTTG TTTGCTACTC AGTGATCGCT 
    TTGCTATTAG ATATGATTGA TTGTAGCTTA CTTAGCTGCT TGTATTTCCT 
    GATGGAGCAG GTGCATCTCG ATTACCTTGA AGCTGGTGCT GATATCATCT 
    CCAGCGCTTC TTATCAGGTT CTTTACCTCC ATCATTCTAT GTTTCTTTGT 
    TTATCTATCT CTTTTTTGGA CACTAACAAC TTGGATTGAT GATAATTCTG 
    AACAGGCCAC GATTCAGGGG TTTGAAGCAA AGGGATTTTC TAGAGAAGAG 
    AGCGAATCTT TGCTTAAAAA GAGCGTAGAA ATAGCGTGTG AAGCTCGGAA 
    CTCGTATTAT GACAAATGCG GAACTAGCTC TTCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23372219 [Map]; Strand: w
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: 0; Region: intron1 (CDS)
      • AT3G63250.2 - [+] show detail - homocysteine methyltransferase 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT15582 - 5-prime edge 
    AGCTTTAAAT ATTGTCAATA ACAACAGTTG AATCAGTAAT CTTCTAAATC 
    TGCTTGAAAC GTCCAAGGAG CAACCAACCA TTGATGGAAA TGAGAATGCT 
    TTACTTCATC CACCTTTAGA GTACCCATGG CATTTACTCA ATCAATCAAA 
    GTAAACCTAA AAATCCTAGG GTTTATTCAC ACCCAAAATA AGAAAAGCAC 
    AAGGCCTTGT CCCGCAGCTG GACGTTGGAT TCAGATTTCA CTGACAACAG 
    AAGAAAAGGA TTTACTGCTT ACGGTGTGAA TGAGGTGAGG AGAGGTGACA 
    AGGCATTTGG CGCTCCAGAG AGGATCGTTG AGATCTGCTT CATCTCACTC 
    GAC

AT3G63250.1

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63250.2

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: methionine biosynthetic process, S-methylmethionine cycle; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR