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GT15587

CSHL Arabidopsis genetrap mutant lines

Original: GT15587

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15587

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1176320 [Map]; Strand: c
      • AT2G03850.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: -579; Region: promoter
    Flanking Genome Sequence: GT15587 - 3-prime edge 
    ACGGTAGAGG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATTAA 
    TGATCATGTA GATAGAGCAA AGTACTATAT GTTTGAGAAA GCTAGTGAAG 
    CAATCGACAA TGTGGCTGAA ATTGCTCAGT TTGCTTCGGA GTTTGTGACG 
    GAGAAAGGCA AGGAGACGAA GAAAGAAACT GCTTCGATAT CGGAGAAAGC 
    CAAAGACTTC ATTGTTGAAA AAGCCGGTGA AATTATAGAT ATAGCGACGG 
    ATGTGAGCAA GAAAACGGCC AAGTACGTCG GAGATAAAGC CAAGGAGGTT 
    AAAGAAGCTA TAATGCCTCC AAAAACTTAA AGTAAAGATT TGATGCAGCC 
    CTAAACATAT ACGAGGTCTT GAGGCAATGT AGCAAAAAAT ATGTATTATT 
    ATGCGAGATA ATGAAAATGT TATAATCAGA ACTCTAAGAC ACGCCTCTTT 
    AATCATTGGA AAATTCTCTT CTAAGTATGT AGTATGAGAT AATAATTAGG 
    ATCCTCCTAG CAAGGTAATG ATGCCTCGAA ATAAGGATAC AGTAACCCAA 
    GTGATCAAAC CGGACTGCAA CAAAACCAGA GAAAGTAACA GATCGATCAA 
    TTTCAATTAC GGTTATCATT TGAATTAACC GGTATTAACA ATCAAACCGG 
    AGAAATGAAG AATCGGTTTT TACGCTTATG GTTGATCTTG TTTCTTCCTC 
    AGTTTTGTTC CACAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1176260 [Map]; Strand: c
      • AT2G03850.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: -639; Region: promoter
    Flanking Genome Sequence: GT15587 - 5-prime edge 
    CTTTCTCCCT GATATTAACA TCTTGCCCTT TCTGAGCAGA CGCATGTCCC 
    ACTTCGCTTC CCTTCTCCTT CACGTAGTCG GAAGCTTTCT GTCTTTTGTG 
    TGTGTGTGTG ACAATTTACA AAATTATTAC ACATGAACAA ATAAAAATGT 
    GTTTTGTATG AAAACCAAAT TTATATCCTT AGTGTTCCCA TTTTATGAAA 
    ACCAAATTTA TGTGTAATAT TTCATAAAGT TAACAAAAAA ACTCTCAAGA 
    GAATAAATTA TCAAACAAAA AAAAATCAAC AAATTTTATT TCTAAAAAAA 
    TAACTATAAA AAATTGACAG AAATTTGAAA ACAATTGACC AAAAAGTAAA 
    AAGTAGTGGT GAAACATATT ACTAAATCAT AATGTATCCT TTATGATTTT 
    TCTATCATAA TATCTCTTAT AATAGTATAA CGAAAAATCA GTATTAACGA 
    TATAGACTTA CGAGGCATCA TCGAGCCATT TGGGGTCGAG TTTTGAGTTA 
    CCATCACCTT TGACGGCTGT CGAAACCCAC GACTTCTTGC ACTTAGGAGA 
    AGTGATCACA TTTTTCCGGC CAACCCTCAT AGCTACTACG CCAAGTCCAA 
    CGCCGCTTCT CTTGCCTCGA CTGATCA

AT2G03850.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G03740.1); Has 577 Blast hits to 318 proteins in 93 species: Archae - 1; Bacteria - 101; Metazoa - 17; Fungi - 21; Plants - 408; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR