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GT15592

CSHL Arabidopsis genetrap mutant lines

Original: GT15592

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15592

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 167612 [Map]; Strand: c
      • AT2G01350.1 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -353; Region: promoter
      • AT2G01350.2 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -365; Region: promoter
      • AT2G01350.3 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -359; Region: promoter
      • AT2G01350.4 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -365; Region: promoter
      • AT2G01360.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: -385; Region: promoter
    Flanking Genome Sequence: GT15592 - 3-prime edge 
    AACGGTAGAG GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATTA 
    GAAGAGTCCT TGATCTGTTC TTTGAGTAAA TACACTCCCT GGATCGATTA 
    CAAAATTTTA AACTGTTTGT TATTCCTGCT TGGCTAAATT CATCTTTCAA 
    TTGTTTACTC CAACTATGCA GGTACCCGTA TGGTACACCT CTGATCAAAC 
    ATTTATGGCT TCTTCTCACT CGACAAATGC AACTATCAGT CGTGCAGTTA 
    CACTTTCAGA ATATTTGCTA GGTTGTCTTA GTAAAAGCAT AGAGATATAA 
    TAGGAAACCG TCCAAACACT TTTGGGTTTG ACAATAGTTG GCACAGTATC 
    TAGTACTGAT TTTGTCTCTT AATGACTACT AATAGTTGGC ACAGTATCTT 
    GGTTATTTAC TTGGCTTCGT TGGCTCTTGA TTACAGCTTG GAAATGGGAA 
    TTCATCTTGA GAAGTCAGCG TATCTTGCGT TAGCTGGTAA CTTTCTGAGA 
    TCAAACGAGC TCTCTAAAGT GATTGATGTG GTCAAGGAGA TGGTGAAATC 
    CCAACACTCG CTTGGTGTGT ACCATGGAGC AATGCTGATC CACATGCTCG 
    GGTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 92920 [Map]; Strand: c
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15592 - 5-prime edge 
    CTTTCTCCCT GATCTTACAG CATGCTTTGA CTTTGTGAGC CTCGATTGGA 
    ACTGATTGTT CAACCAATAG TCGTGTTTTA CAGTGACTCA TCAAGGTTTG 
    GTTTACGTCG ACCCTTCATA GCCGCTGGCA CTATCCTCCT CTCACCATTG 
    TGGTACTACT TATCGGCTAT GCAATCGACG TTGGGGTTTT GATTGGTGAT 
    TATTGTCCAA TCCATATGTA TTTTACTCAT TGGTTTATGT AGCTTAGTCC 
    TTAGACATCG CTAAGATCAT GTTCAAGGTC CGTGTAGGGC CTTCTAGTTG 
    ATGTAGAAGC GGGAAATGCT AAGAGAACAC AAGTTGAAAA CCAGCTTTTA 
    TAAAAATGGT GAAAAAAAAG ACAAAATTGG CTCAAATTCT CTAGTAAATT 
    AGAAAGATTG TTAAATCAAA TGCATGCTTC GAAGATGTTG TTAAAATAGT 
    GTGGACTACA AAGCAAACCA GAGTATCAAA CTCAATTGAG TCGGGTTTAA 
    ATAATATTTT GGGCTGCTTG ATATAAGAAA AAAAAACTTT ATTGAACCCA 
    TTTAAGGCCC AATTATAAGT GATAGGGAAA ATGAGAAATG

AT2G01350.1

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5853 Blast hits to 5853 proteins in 1914 species: Archae - 184; Bacteria - 3582; Metazoa - 59; Fungi - 129; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.2

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.3

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5825 Blast hits to 5825 proteins in 1916 species: Archae - 184; Bacteria - 3588; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1813 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.4

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5862 Blast hits to 5862 proteins in 1918 species: Archae - 184; Bacteria - 3596; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01360.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G01390.1); Has 425 Blast hits to 414 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR