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GT15602

CSHL Arabidopsis genetrap mutant lines

Original: GT15602

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15602

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490585 [Map]; Strand: c
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15602 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGGTTT 
    AGGGTCTGTG TTTTTATTTG CAGACAAAAC AGCATAGCTC CCCCTGTCTA 
    GAGTGGTCGT GGAGACCATC CAATCTTCAT CAACAATGAG AGGAGCCGGA 
    GACGCACACA CATGATCAGT GTTTGTAGCT GCGTAAGGAA AAAATCTTCC 
    CTAAAAACAA CATCTCGAGA AATAAGAAAT TCCTTCATCT CTCTCGACAA 
    AANTTTCCAA CCTTTTTGTG CGAAAGGATA ACCTATAAAA ACACACCAAC 
    GGCTTCTCTC CCCAAATTTA TCTTTATCAC GGGAAGCACG ATGAACATAA 
    CACGCAGAAC CAAAGACTCG CAGCTGCTCA TAATTTGGCT TGGAGTTATG 
    AAGAATTTCG TAAGGAGAGA GTCCATTATG AAGTGATGTA GGAGTGCGAT 
    TGATTAAGTA TGCCGCCGTT AGAACCGCTT CTCCCCAAAA TTGTATTGGA 
    AGGCTTGCTT GAAACAATAT TGCCCTTGCG ACATTAAGGA TATGCCGGTG 
    TTTACGCTCT ACACGACCAT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490566 [Map]; Strand: c
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15602 - 5-prime edge 
    TCCTACTTTC TCCCTGCCTA AACCGAATTC TGTTACTAAA CCGGACGATT 
    TTGCTGCACC AGAATCTGTT ACTAAACCGG ACGATTTTGC TGAACCAGAA 
    TCTGTTACTA AACCGGACGA TTTTGCTGAA CCAGAATCTG TTACTAAACC 
    GGACGATTTT GCTGAACCAG AATCTGTTAC TAAACCGGAC GATTTCGCTG 
    AACCAGATTC TGTTATTAAA CCGGACGATT TCACTGAATC AAATTCTGCT 
    CTTCAAACCG ACTCTGTTTT CGAACCAGAC TCTGATTCCG ACGTGGCACC 
    TGCTTCTATT GCTTCCGATT TACAAAATTC ACGAGTTGAT TCATCTGATT 
    CATCGACGCC GGATAAGAAT CTTGCTTCTG GTGATACTTT GGCTCAAATT 
    GATGATTCTC CTGATATTGT CTCAACTCCT AATCGTAATA ATCAGCCATT 
    GTTCGTTGTT GACAGTCCGT TTGTTGAAGC TACGTCTCCT CGTCAAAGAA 
    AGCGTCAGAT TAGACAGTCG GTTCGTCTGC AGGATTACGT TCTTTACAAT 
    GCAACAGTCT CTCCAATAAA CCCCCACGCT CTTCCCGATT CT

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR