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GT15605

CSHL Arabidopsis genetrap mutant lines

Original: GT15605

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15605

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20523040 [Map]; Strand: w
      • AT5G50390.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -60; Region: promoter
    Flanking Genome Sequence: GT15605 - 3-prime edge 
    GGTAGAGGTA TTTACCGACC GTTTCCGATC GTTTTCATCC CTAATTCCGA 
    TCAATATGAT CTGGATCCTC TGTTTGCTCC TATATCTCTT ATTGACCCCA 
    TTCTCTTCCA ATCATGGAGA TTCCACTCTC GCGTTACCAG AGCATAAGAT 
    TAGACGAGAT TCGAGACTCT TCTTCCAATC CCAAGGTTCT CACTTTCCCA 
    CGAAAATTCT CGTTACGAGG AAGAAGATGG AAGAACCCAT TTGGAAGACT 
    CAGTTGTTCT TCTGTAGTTC AAGGTCTGAA ACCAAAACCG AAGCTGAAAC 
    CAGAACCCAT TAGAATCGAG GTTAAGGAAT CGAAAGATCA GATTTTGGAT 
    GATACCCAGA TCAGTAAATC TGGTGTAACG ATTTGTAGTC AGATAGAGAA 
    GTTGGTTTTG TGTAATCGAT TCAGAGAAGC TTTTGAATTG TTTGAGATTC 
    TGGAGATTCG CTGTAGTTTT AAAGTTGGTG TTAGTACTTA TGATGCTTTA 
    GTGGAAGCTT GTATTCCTTT GAAATCGATT CGGTGTGAGA AAAGGGTTTA 
    TGGGTTTATG ATGAGTAATG GGTTTGAGCC GGAGCAGTAT ATGATGAACA 
    GAATCATGTA GATGCATGTC AAGTGTGGGA TGATTATTGA TGCACGTAGG 
    TTGTTTGATG AAATCCCTGA GAGAAATTTG TATTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26074334 [Map]; Strand: w
      • AT5G65230.1 - [+] show detail - myb domain protein 53
        Distance: 4682; Region: intergenic
      • AT5G65240.2 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 68; Region: intergenic
    Flanking Genome Sequence: GT15605 - 5-prime edge 
    CCTACTTTCT CCCTGGGAGT CGGTTAATGA CTTTGACATA AGCAGATATT 
    TGTATTGAAT ATTGTTCTTA ATTTCCTTTT CTTTGAATGG GCTTTATTTC 
    CTTTTTTCTT CGGATGGGTT TTGGTTCCTT TTTTTTGATG AATTGTAAAA 
    AAGTTACGCA GAGAGAAGAA GCAAAACAGG AATAGACTTT TGGTGATTAC 
    TAATGCAGTG CAAGGGAGAC TCTGTCTACT TGGTGGTTAT GTCTCTTGCT 
    GAAGAGCCGG TCTTGTTTAG AGCTTTTGGT TCTGTTGATC TGTGTTTATG 
    TAATCACACA CGTCTACTGT TTGGATAACC CGAGATAGAG TAAAAACTAA 
    GAAGACAACA GATAGAGATG ATGATCCTGA ATCAATATAT CCTCAAGCAA 
    ACTGTTAGCA TATATGGAGA TGATGTTGCA AAACCAGTTT ATGTAGCACA 
    AGCAAGCAGC AGATTCTGAA AATTTCATTG ATACAAGTTA CAAAGGACAT 
    TATTATGTTC TGTCACAAAG TTTCAAACAT TTGGATCGAA AACGTTACAA 
    CATAAATACA CAAGTGAACA TTATAATGGC GCGTGATTCA TTCGCCGATA 
    CATATAAACT GCGAAACCAA AACTTCATTC ATGTTTGAAA CCAAAACTAG 
    TTGTTTCTTC TTCTACTTTA CAGTGTGTGA TTCTTCTATC TTTTGAATCA 
    AAAGTATTTT TTGTTTCTAT CTTCCACCAG ATAATTCAAT AGCATCTTGA 
    TTATTAATGG AATCTT

AT5G50390.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65230.1

Model type
Protein coding
Short Description
myb domain protein 53
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 53 (MYB53); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 92 (TAIR:AT5G10280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65240.2

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G10290.1).
Link
InterPro Scan - TAIR