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GT15615

CSHL Arabidopsis genetrap mutant lines

Original: GT15615

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15615

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 525865 [Map]; Strand: w
      • AT4G01250.1 - [+] show detail - WRKY family transcription factor
        Distance: -1649; Region: intergenic
      • AT4G01245.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -1726; Region: intergenic
    Flanking Genome Sequence: GT15615 - 3-prime edge 
    AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC AATAGTATCC 
    CATGTTTAGA GTATGTGGCA GAGTGATCAA CACTATGTTG CTAAGTGACA 
    ATCACTATCT TTCTATCTAC ATACTTTTTA TATTGCATTT AAGCACATTT 
    TTTGGAAAAA TATAAAATGG AATACATATG TGTTATCCAT GAATGGTTCT 
    TTTTTTATAA ACATCAGTTG TTAGATTGAC TATTTTGTAA TGTCGAAAGC 
    TCACAACAAA TTAAACTTTT ATTCTTATCC CTTAACATTA TAATTTTTTT 
    TGTCTAAATT AATCTTGACA ACTTCCAATT CCATAATCGT TGGTGTAAAA 
    AGATTTAAGA ATTGTTTACT TCTGTCCCGC TCGACTAAAN AAAAAGTGGG 
    CACTAGTACG AAAGTATGGT TTCCCACTAT TTAAAATCAA ATCAAAAGGA 
    TCCCCAAAAG CGCGTGTGAG AGACGCGTGG AAATGTCCAA AGGAGTGTGA 
    GGTTGACAAA AGATGAATTA AGAGATTTAT TCAAAGCCTT TGACATTTTA 
    TCAAAGTCAA CCAAATACAA GAAACCAGAA ACCATAGGTG GTTTAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490567 [Map]; Strand: c
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15615 - 5-prime edge 
    TCCTACTTTC TCCCTGCCTA AACGAATTCT CGTTACTAGA ACCGGACGAT 
    TTTGCTGTAC CAGAATCTGT TACTAAACCG GACGATTTTG CTGAACCAGA 
    ATCTGTTACT AAACCGGACG ATTTTGCTGA ACCAGAATCT GTTACTAAAC 
    CGGACGATTT TGCTGAACCA GAATCTGTTA CTAAACCGGA CGATTTCGCT 
    GAACCAGATT CTGTTATTAA ACCGGACGAT TTCACTGAAT CAAATTCTGC 
    TCTTCAAACC GACTCTGTTT TCGAACCAGA CTCTGATTCC GACGTGGCAC 
    CTGCTTCTAT TGCTTCCGAT TTACAAAATT CACGAGTTGA TTCATCTGAT 
    TCATCGACGC CGGATAAGAA TCTTGCTTCT GGTGATACTT TGGCTCAAAT 
    TGATGATTCT CCTGATATTG TCTCAACTCC TAATCGTAAT AATCAGCCAT 
    TGTTCGTTGT TGACAGTCCG TTTGTTGAAG CTACGTCTCC TCGTCAAAGA 
    AAGCGTCAGA TTAGACAGTC GGTTCGTCTG CAGGATTACG TTCTTTACAA 
    TGCAACAGT

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT4G01245.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G01270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01250.1

Model type
Protein coding
Short Description
WRKY family transcription factor
Curator Summary
member of WRKY Transcription Factor; Group II-e
Computational Description
WRKY22; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G23550.1); Has 3274 Blast hits to 2836 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 3256; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR