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GT15627

CSHL Arabidopsis genetrap mutant lines

Original: GT15627

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15627

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10535841 [Map]; Strand: w
      • AT1G30030.1 - [+] show detail - transposable element gene
        Distance: 999; Region: intergenic
      • AT1G30040.1 - [+] show detail - gibberellin 2-oxidase
        Distance: -1807; Region: intergenic
    Flanking Genome Sequence: GT15627 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCATATGT 
    ATGTAAAGAA TTATCATATA CTTAGGATCA CAATGACCCT ATAAAAAGAT 
    TATATTTTTG GGTCAAAAAG CTAATTAAGA TCTTGAGATT TTGTGAATCA 
    AGATCTTGTG AATACTTTCT GTACTCTTTA TCTTTTTGGT TTGTTTGGAT 
    AATTGGAAGA ATTTTAAATG GAAACCTAAA TTATTCTTCA AGTTTTGTAA 
    ACACTGAAAA ACATTTTGCC AATTTGAACG CCTAACTAAT AATCACCGGT 
    AAAAAAAACC TTATAGTAGA GGTCTATGGA GGAAAATGAT TGGATCTCTT 
    GTCTAAAGAC CACCAAATAA ATCTGCACCA CTTTATTTTT TTCATGGTTT 
    TAGAAATGAG TAAAAAAAAA TGAATCCCCT ATGCACAAGG AAACCGTAGG 
    AGTGAGGATG GTGATGTTGA AAAATAAAGC CTACCCATCA AAGAGGCCCA 
    AGGCCAGCTT TCTTACACGT TTATTTTATT TTACTTTTCA TAAAAATAAA 
    TAATACAGAA ATAGAAACAT CCTTATCCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10535949 [Map]; Strand: w
      • AT1G30030.1 - [+] show detail - transposable element gene
        Distance: 1107; Region: intergenic
      • AT1G30040.1 - [+] show detail - gibberellin 2-oxidase
        Distance: -1699; Region: intergenic
    Flanking Genome Sequence: GT15627 - 5-prime edge 
    TTTCCATCCT TAGCTCTCTT GTATTTGTAT AAACCAAGCA ATTTTTAAAT 
    TCTAAAATTA TATTTTGAAA AGTGAAAGAA GATACACTTT TTACCAACCG 
    AACAAGTCTA ACTGAACCAA ACCAAAACTT GAAGATGCGT ATCCTACATT 
    TGAATATTAT ATAAGAGAAA TTGGTGGAAA ATTATACGAA ATTTAAATTT 
    ATTGTAAGTA CTATTATTAT TTGGTAATCG GAAGTTCTGA TCCATAGGCA 
    TCATGTAAAT ACTACAATAG TTAAATACGA CCACATCAAA ACCAAATCCT 
    AGGAAACACA TGAGGTTATG ATTTTAACCA CCATACTCTG TACTGGTAAT 
    AATTCACCAC CCGAGAAACC GGAGAGAACC TACAACCAGA AAGCACCTAC 
    ATCGAATTTT GGAAGCAATA AAGATTACAT TATGTATCAG AAATAATCGT 
    TAATACATGT AACAATGAAT TATTTGTTTC GAGTGCAAGG TTTATTTATC 
    ATGATTCACA GTATATCTAA AATAATAATT TTTTTGTTTA GATATATTAA 
    GAGCTCCCTC TGGCAGTTTG ATTTAAACCT AGAATTTGTA ATTTGTATAC 
    TTCTGATTTC AAATTCATCC CTAAAACGGT AAAAATATAT ATTTCAACCC 
    GAATGTTCAA AATAAAATTA TATATGTATA TATATTCCCA ACCCTACATG 
    CACTTAGATA TTATTGAACA AATAAATTAA ATAGAGTAAA CAAAGGTTAA 
    TTACTGCGCG TC

AT1G30030.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.5e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)
Link
InterPro Scan - TAIR

AT1G30040.1

Model type
Protein coding
Short Description
gibberellin 2-oxidase
Curator Summary
Encodes a gibberellin 2-oxidase that acts on C-19 gibberellins. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.
Computational Description
gibberellin 2-oxidase (GA2OX2); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 3 (TAIR:AT2G34555.1); Has 8540 Blast hits to 8490 proteins in 994 species: Archae - 0; Bacteria - 1137; Metazoa - 84; Fungi - 1033; Plants - 4909; Viruses - 0; Other Eukaryotes - 1377 (source: NCBI BLink).
Link
InterPro Scan - TAIR