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GT15632

CSHL Arabidopsis genetrap mutant lines

Original: GT15632

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15632

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1176318 [Map]; Strand: c
      • AT2G03850.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: -581; Region: promoter
    Flanking Genome Sequence: GT15632 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    AATGATCATG TAGATAGAGC AAAGTACTAT ATGTTTGAGA AAGCTAGTGA 
    AGCAATCGAC AATGTGGCTG AAATTGCTCA GTTTGCTTCG GAGTTTGTGA 
    CGGAGAAGGG CAAGGAGACG AAGAAAGAAA CTGCTTCGAT ATCGGAGAAA 
    GCCAAAGACC TCATTGTTGA AAAAGCCGGT GAAATTATAG ATATAGCGAC 
    GGATGTGAGC AAGAAAACGG CCAAGTACGT CGGAGATAAA GCCAAGGAGG 
    TTAAAGAAGC TATAATGCCT CCAAAAACTT AAAGTAAAGN ATTTGATGCA 
    GCCCTAAACA TATACGAGGT CTTGAGGCAA TGTAACAAAA AATATGTATT 
    ATTATGCGAG ATAATGAAAA TGTTATAATC AGAACTCTAA GACACGCCTC 
    TTTAATCATT GGAAAATTCT CTTCTAAGTA TGTAGTATGA GATAATAATT 
    AGGATCCTCC TAGCAAGGTA ATGATGCCTC GAAATAAGGA TACAGTAACC 
    CAAGTGATCA AACCGGACTG CAACAAAACC AGAGAAAGTA ACAGATCGAT 
    CAATTTCAAT TACGGTTATC ATTTGAATTA ACCGGTATTA ACAATCAAAC 
    CGGAGAAATG AAGAATCGGT TTTTACGCTT ATGGTTGATC TTGTTTCTTC 
    CTCAGTTTTG TTCCACAAAC AAGAATAAGA TCGCTTTATC TGACAATAAC 
    AAGACCAGAC ATTACTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4945039 [Map]; Strand: w
      • AT5G15230.1 - [+] show detail - GAST1 protein homolog 4
        Distance: 0; Region: exon1 (CDS)
      • AT5G15230.2 - [+] show detail - GAST1 protein homolog 4
        Distance: -192; Region: promoter
    Flanking Genome Sequence: GT15632 - 5-prime edge 
    GATTTAGAGG AGTGTTTGGT TCTTTGGATA ACAATATCCC AAACTGAAAA 
    TGGTTAAGTC ATATGGAGCT ATCTTCCTCT TGACCCTCAT TGTCCTCTTC 
    ATGCTTCAAA CCATGGTAAC ACCTCTATTA TTTTTTTCTT CTTTCAATGT 
    TTGAAAATAT TGAAGATAAT ATATTTGATC GTTTTCCTTA TTGACGAACG 
    ATATGAGACA AATGTGGGTT CTATTATTGT ACTTTTAGTT GGAATATATT 
    TAATTTAACC TTTTTAATGA AATTAATTTT ACTT

AT2G03850.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G03740.1); Has 577 Blast hits to 318 proteins in 93 species: Archae - 1; Bacteria - 101; Metazoa - 17; Fungi - 21; Plants - 408; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT5G15230.1

Model type
Protein coding
Short Description
GAST1 protein homolog 4
Curator Summary
gibberellin-regulated (GASA4)
Computational Description
GAST1 protein homolog 4 (GASA4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT1G74670.1); Has 476 Blast hits to 476 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 476; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15230.2

Model type
Protein coding
Short Description
GAST1 protein homolog 4
Curator Summary
gibberellin-regulated (GASA4)
Computational Description
GAST1 protein homolog 4 (GASA4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling pathway; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT1G74670.1); Has 474 Blast hits to 474 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 474; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR