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Mutant Lines
GT15643

GT15643

CSHL Arabidopsis genetrap mutant lines

Original: GT15643

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15643

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 220959 [Map]; Strand: w
- AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1216; Region: intergenic
- AT4G00490.1 - [+] show detail - beta-amylase 2
  Distance: -1361; Region: intergenic

TACCGATCGT TATTTGTTTA CCATCAAAGC ACTATTTTGT CCGAAGTAAG 
TAAATATAGC AAGTGGCAGT AAAAAAATAG TAATAAAATT GAAGGCAAGA 
TCAGGAGAGA GCTGGCTGAA ATGAAGGCAA GAAACTCGTG AAAATAATAA 
TTGATCCATC TCTATCCACG AAGCCCTACA TAATTTAGTA ACGCACCACT 
TGTGGTTGCA TGCACATTTA TTTCCATAAC GACAAAACTT TGTGTTTAAT 
TTTATAAATT ATTTCTGTTG GCACAACACA CTCATTATAG CCATATGTTT 
GTGTTTATAT TTTCTATTTT CATAGAAACA ATTAATTTAA TTTTAGATGC 
CCTAGACATT TTTTAAATGT ATATAATAAT AAAATTATAG TATAAAAGTC 
TATATATTAC CCTAAATTTT ACAAAACATA TACAATCCTA ACCAATGGGA 
TCCTATATCA AATTGCATTC AGGATGAAAA AGAAGCGACA TGAACCACGA 
CAAAGAGAAA AGTTAGATAA ATTTAAAGTT GAGTGAGAAC TTGAAGTCTT 
TAATTCTCAT TATACAAGCA ACAATTTTCT TTCTTCGGAG AGAAAGAAAT 
GAGAGATTGC ACAACACTTC AAGTTCTCTC CTAAGATTGT TTTGTGGCAG 
ATTGACATAA CCATCCGTGA CAATATCGCA AAGGTTGTGG GAAGATTGTT 
GTCCCAAATC CAATGGTTCA CCCAAACCTA GTTACTATAG TTGGCTCTTG 
ACTGGTATTA GTTTCAGTTT TTTTTTTTTT

AT4G00480.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational Description: ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00490.1

Model type: Protein coding
Short Description: beta-amylase 2
Curator Summary: Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description: beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link: InterPro Scan - TAIR