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GT15644

CSHL Arabidopsis genetrap mutant lines

Original: GT15644

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15644

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2955760 [Map]; Strand: c
      • AT3G09640.1 - [+] show detail - ascorbate peroxidase 2
        Distance: -396; Region: promoter
      • AT3G09640.2 - [+] show detail - ascorbate peroxidase 2
        Distance: -399; Region: promoter
    Flanking Genome Sequence: GT15644 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATA 
    GTGTGTCTAT CAACCCTTAA GTCTTTTTGG TGGATAGTGA AGCTCAAACC 
    CAATTCAAAT GTCGATCAAC CCTAACGTTT TTGTGCTCGA TAGTAAAGCA 
    TGAGTATAAA AAGAACGTCG CTTCTTCCTA CAATCACACA GATCATTTGA 
    AGCTTTGATT AGTTGGTACA ACATACTCGA GGAATACAGA ATGACACGTG 
    GTGTGTATCT GTTGGATAAA TTTGTATTAT TCTTCTTTAC TATGGATGGT 
    TTCTGGAAGG CGCGCCAAGA GTCCTTCTTT TTCCATCTAN CAAATCATGA 
    CCGTCCATAC TCCAAAAGAA GACTGAAACA GTGAAACTAG AAGCTTCATT 
    TTGATCATCA GCCAGTTTTA TAAATTGATC CGTATACTAA AGTAACAACT 
    ACTAGCACTT TCTCNNGAAC ACGACTAANN GNGTTTAAAC TAAAGGTTTG 
    TATGTTCTTG TAATCTTATT GATCTCGATA GGTTCTCCAT TCTCTTTAGG 
    TTTTAAAGCC TTCAACGATT TCCAGAAGGA AGCGAATTTG AAAAAAATGG 
    TGAAGAAGAG TTACCCGGAA GTGAAAGAAG AGTACAAGAA AGCTGTTCAG 
    AGATGCAAGA GGAAGCTCCG TGGTCTTATT GCCGAGAAGC ACTGTGCTCC 
    CATCGTCCTC CGTCTTGCGT AAGATCCTCT CTCTGGTTCC AGTCTTTTCT 
    GTTACTGTGA GTACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2955701 [Map]; Strand: c
      • AT3G09630.2 - [+] show detail - Ribosomal protein L4/L1 family
        Distance: 0; Region: exon2 (3UTR)
      • AT3G09630.1 - [+] show detail - Ribosomal protein L4/L1 family
        Distance: 0; Region: exon2 (3UTR)
      • AT3G09640.1 - [+] show detail - ascorbate peroxidase 2
        Distance: -455; Region: promoter
      • AT3G09640.2 - [+] show detail - ascorbate peroxidase 2
        Distance: -458; Region: promoter
    Flanking Genome Sequence: GT15644 - 5-prime edge 
    CTTTCTCCCT GCACCTATGC CTTTAAACAG TAAATCAATC GACATATTGA 
    TCAATTGAAC TTGATTAATG TTTCTGCTGG GGTAAACCAA AGAAAGCTTC 
    AGCTTGTTTT TAAGTAGGTT CATAACATAA CAAGCATCAT CATAGGAAAC 
    GAAGGAGCAA GAGATAAATA AATGAAACTG ATAAAGGCGA AGTAAGAAAT 
    GGAGATGTAA AAAAGTGAAA CTTGTTCATA ATTCAACTTG ATATCCAGAC 
    ACCCAAAGAC AAAACAGATT AAAAAAACCA AAATCTTTTG ACTAAAATAT 
    GGAAAGTGTT CCAAAGCAGA CGAGATTATT ACTGGCTAGC ACCGAGCCAT 
    TTGGTGAAGT TATCAAACTC GGTGTAATCA CTGTCGGAGA TCATAGTCTT 
    GTACCACGAC TTGCCTGCTG CTTTGATTGC CAACGCCTCC TCCTGATGTA 
    AGAAAAATAG ATATTTCAAA GTGGAGTTAG AAAAGAGGAC ATATGAAGAA 
    CAATTTTCAC AAGGGACAAG AAAGTGCTAA GAGATTCAAT TGCTTAATAG 
    CTCAACCTAA AATCAATATC AAGACAAAGA ATCGTACACA ACAGATTTAC 
    AAGACAAACT ACTAGACCAC AATTCAGAAC AGAAAAGGTA AGATCTAGTA 
    AAGAAAGACT ACTATAGTCA TAGACTAAAC CAGAGGGGAA CAGATTATTG 
    TATAGCTTAA CATAGAATGT AAACAAATAC CTGACACTTA GTCATACACA 
    AACTCAGTCA ATTAGAACAA TTGCAATATA AGTTAAGTCA AATGAAATG

AT3G09630.1

Model type
Protein coding
Short Description
Ribosomal protein L4/L1 family
Computational Description
Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT5G02870.1); Has 1142 Blast hits to 1141 proteins in 405 species: Archae - 316; Bacteria - 17; Metazoa - 269; Fungi - 177; Plants - 117; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09630.2

Model type
Protein coding
Short Description
Ribosomal protein L4/L1 family
Computational Description
Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT5G02870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09640.1

Model type
Protein coding
Short Description
ascorbate peroxidase 2
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 8439 Blast hits to 8256 proteins in 1276 species: Archae - 55; Bacteria - 2395; Metazoa - 20; Fungi - 832; Plants - 3373; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09640.2

Model type
Protein coding
Short Description
ascorbate peroxidase 2
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR