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GT15670

CSHL Arabidopsis genetrap mutant lines

Original: GT15670

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15670

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16431560 [Map]; Strand: c
      • AT2G39350.1 - [+] show detail - ABC-2 type transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15670 - 5-prime edge 
    CCTACTTTCT CCCTGACCTC TGGTTTGGAT TCAACGAGTG CTTTCATGGT 
    GGTTAAAGTA TTGAAGAGGA TTGCTCAGAG TGGTAGTATC GTAATTATGT 
    CGATTCATCA ACCTAGTCAT CGTGTTCTCG GTTTGCTTGA CCGGTTAATC 
    TTCTTGTCAC TCGACCACAC CGTGTATAGT GGATCTCCGG CGAGTCTTCC 
    ACGTTTTTTC ACCGAATTCG GGAGTCCGAT ACCGGAGAAC GAGAATCGAA 
    CGGAGTTTGC GTTAGATCTC ATCCGTGAGC TTGAAGGATC CGCCGGAGGA 
    ACGAGAGGAT TAATCGAATT CAACAAAAAA TGGCAAGAGA TGAAGAAACA 
    GAGCAATCGT CAACCACCGT TGACTCCACC GTCATCACCG TACCCAAATC 
    TAACACTAAA AGAAGCAATC GCCGCAAGTA TCAACAGAGG AAAGCTAGTT 
    TCCGGCGGTG AATCCGCCGC TAACGGCGGA GCAACCACCA ACACCGCAAC 
    CCTAGCCGTT CCTGTATTCG CGAATCC

AT2G39350.1

Model type
Protein coding
Short Description
ABC-2 type transporter family protein
Computational Description
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G55090.1); Has 383683 Blast hits to 350637 proteins in 4113 species: Archae - 6942; Bacteria - 305769; Metazoa - 8575; Fungi - 6049; Plants - 5390; Viruses - 9; Other Eukaryotes - 50949 (source: NCBI BLink).
Link
InterPro Scan - TAIR