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GT15672

CSHL Arabidopsis genetrap mutant lines

Original: GT15672

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15672

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23744339 [Map]; Strand: w
      • AT1G63990.1 - [+] show detail - sporulation 11-2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT15672 - 3-prime edge
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACTTCAGGTT TTGCTATAAC TGGAGACTTG AATTTGCTAG ACAATACCAT
    CATGAGAACT GATGCTCGTT ATATCATTAT TGTGGAAAAG GTAGCTTCTT
    GATGTAATCA AGCACATATG AGAGATGTCG TAATTGTCTG TAACTCACTC
    CTAGAATCTG TTTTTAGCAT GCGATCTTTC ATCGGCTCGT GGAAGATCGT
    GTGTTCAATC ACATTCCTTG CGTGTT

AT1G63990.1

Model type
Protein coding
Short Description
sporulation 11-2
Curator Summary
Encodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. Plants homozygous for atspo11-2 exhibit a severe sterility phenotype. Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction.
Computational Description
sporulation 11-2 (SPO11-2); FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding; INVOLVED IN: in 11 processes; LOCATED IN: chromosome; CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT5G02820.1); Has 890 Blast hits to 889 proteins in 304 species: Archae - 214; Bacteria - 14; Metazoa - 169; Fungi - 107; Plants - 162; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).
Link
InterPro Scan - TAIR