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GT15699

CSHL Arabidopsis genetrap mutant lines

Original: GT15699

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15699

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1176314 [Map]; Strand: c
      • AT2G03850.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: -585; Region: promoter
    Flanking Genome Sequence: GT15699 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TATTAATGAT CATGTAGATA GAGCAAAGTA CTATATGTTT GAGAAAGCTA 
    GTGAAGCAAT CGACAATGTG GCTGAAATTG CTCAGTTTGC TTCGGAGTTT 
    GTGACGGAGA AAGGCAAGGA GACGAAGAAA GAAACTGCTT CGATATCGGA 
    GAAAGCCAAA GACTTCATTG TTGAAAAAGC CGGTGAAATT ATAGATATAG 
    CGACGGATGT GAGCAAGAAA ACGGCCAAGT ACGTCGGAGA TAAAGCCAAG 
    GAGGTTAAAG AAGCTATAAT GCCTCCAAAA ACTTAAAGTA AAGATTTGAT 
    GCAGCCCTAA ACATATACGA GGTCTTGAGG CAATGTAGCA AAAAATATGT 
    ATTATTATGC GAGATAATGA AAATGTTATA ATCAGAACTC TAAGACACGC 
    CTCTTTAATC ATTGGAAAAT TCTCTTCTAA GTATGTAGTA TGAGATAATA 
    ATTAGGATCC TCCTAGCAAG GTAATGATGC CTCGAAATAA GGATACAGTA 
    ACCCAAGTGA TCAAACCGGA CTGCAACAAA ACCAGAGAAA GTAACAGATC 
    GATCAATTTC AATTACGGTT ATCATTTGAA TTAACCGGTA TTAACAATCA 
    AACCGGAGAA ATGAAGAATC GGTTTTTACG CTTATGGTTG ATCTTGTTTC 
    TTCCTCAGTT TTGTTCCACA AACAAGAATA AGATCGCTTT ATCTGACAAT 
    AACGAGACCA GACATTACTT TTGC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15699 - 5-prime edge 
    CCTACTTTCA TCTCCCTCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19559751 [Map]; Strand: w
      • AT2G47720.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 2612; Region: intergenic
      • AT2G47740.1 - [+] show detail - pre-tRNA
        Distance: 104; Region: intergenic
    Flanking Genome Sequence: GT15699 - 5-prime edge 
    AGAAACCAGA GCACCAATGA GCTGAGAGTT TGGGAGATCT CTTGCGATGA 
    GGATCATGAC TCAGTACATT CCTAAACTAT TCTCGTATCC ACTGAGTTAC 
    TCGTACAAAT CCATAAATGA CCATACAAAG TAGCCTCTCG TGTGAAAATA 
    GTGATAACAA TTAAAAATGA AAAAATGCGC ATCCAGGGAA TCGAACCCTG 
    GTCAGTACCG TGGGAGGGTA CTATGATACC ACTACACCAG ATGCGCTTTT 
    TATTATGCTG ACAAGTTTTT TATTATTAAC TCTAACATTT GTTCTGCCGG 
    GAAAGTTTCC TGATGATAGT AAGAAACACG GCAACTCGAA AGAGAAGACA 
    ATGGCGCGAG GAGGATTTGA AGATAACGAA ACCAGAGAAA GCCTGCACTG 
    AAGTTAGAAA ACGGTGAAGG AAGAAGAAGA AACACAGTAG AGGAAGTGGT 
    AACGCCCTAG CGGTGAAGCA ACGACGCCCG TCTTAAGCCG ATAAAATTTC 
    TTATAA

AT2G03850.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G03740.1); Has 577 Blast hits to 318 proteins in 93 species: Archae - 1; Bacteria - 101; Metazoa - 17; Fungi - 21; Plants - 408; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT2G47720.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47740.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: CCC)
Link
InterPro Scan - TAIR