GT15708 - RIKEN Arabidopsis Genome Encyclopedia
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GT15708

CSHL Arabidopsis genetrap mutant lines

Original: GT15708

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15708

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20782742 [Map]; Strand: w
      • AT3G55990.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT15708 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCCTTTTCA TCCCTACGGA GAGTTTGGTA 
    ATGTTGAGAA AGTAAACCGG AACATTAAGA GAATGCGTGA CGTTTTCCGC
    TACTGAAAAC AGTCTGTAGT CTGTTCCTAC GCTGAATGGC ATTGACATGT
    TTAGGATTGG TGTCGTCTCT AATGCACACT TGATCCCATC TGGATTCTCC
    CAATCCAAGC TCCTATACAA TATAACAACA AAAATTACAA AATATATTTT
    GTTAGTTAAG ATAAACACAT ACAATTAAAA GTCTAATATG TGGGTGGTTC
    ACCAACTCGT TAAAATGAAA TACTATTTAG AGTTTTTATG TTTTTAGCTG
    ATTTTTGTAT ACTGTGTGGA TTTTTCAAAG GACAACGACT TGTTATCTCT
    TTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20782817 [Map]; Strand: w
      • AT3G55990.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT15708 - 5-prime edge
    CTACTTTATC CCTGAATCCG GAAAGAGCTC ACACTTCCGT TCCACAATCC 
    GACAAGGCAA AATGCTGACG CCGGAGCAAC AAGCCGATCC CAACACTTAC
    GCCGATTGTA TCCATTGGTG TCTTCCCGGT TTACCTGACA CGTGGAATGA
    GTTCCTTTAC ACACGTATCA TTTCCCGTTC GTGACCTACA AAATATTTGA
    AATATCTCTT TTTCAATATT TTTTCCCACT TTGCTCCATC CAATGGAAGA
    GCCTTGAAAT TTTATTATTT TGATGTCCTA ATGTTCATAA TTTTTCTTGA
    ATTGTAATTG TGAAATGTTT CTTTCTTTTT CTTTAATGGT TATTAGAGTG
    CCTAGTAGGC TATTTTAACT GTTTTTGTAC TCTTAAAACT TTGAAATGAG
    GTGGATAACA AAGGATGCCA AATGTTTTTT T

AT3G55990.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
ESKIMO 1 (ESK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 (TAIR:AT2G40150.1); Has 1336 Blast hits to 1309 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR