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GT15735

CSHL Arabidopsis genetrap mutant lines

Original: GT15735

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15735

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551643 [Map]; Strand: c
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT15735 - 3-prime edge 
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAA 
    TTACAACATC AGGTAATTAG AAAATCATGA TTATTCATTT TGTCTTATAT 
    CTTATAATAG TCACTAATAA ATATCTGATT TTTACAAAAT ATTTTTATGG 
    TGAAAGAAAC ATCTGATGGT AGCAATGAGG GCCTACAACC AACTTCTTCA 
    AGAATCTGGT GGAGCTAGTT GTGTCATGTT TCATGACACT CCTATTTTTA 
    TAAATCTTTC GCGTATTACC TATGTCGCAA ATAAAAGATT TTGGTTAACC 
    GCTAAAAGTT GAAAAGAATT GATCACCAAA AGCTTGTAAT TCGAATATTC 
    GGTTATGATC TGTATCTTTG CTAACTCACT TGTTACCTAA TTGTAGTTCG 
    AATTCGAGTT CTATGTGCTC TTGTTGTCAC CTGTTGTCTG TGCAATAATG 
    GGATCCCAAC ATCCCCGAGG ATGGCCTTGT CGTTATCAAT GGGCCAGATG 
    ACAGTAAAGC GAGGTTCAGT ACAAAGTGAT CATTTCCGAA TCGATTCGTA 
    TTCGAACGTA TCTGACACGT GTCANATCGC CGCGTCTGTA CGCGCGCGTG 
    AAGCTCAGGA ACCGAAGCGT CTCGTAGGTT TAATGATGAC CTCGTAGGTT 
    TGTCGCCCAA TCGCCTCTAT TTATATTAGA TTAAACCCTC GGGAAATCAT 
    TTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551591 [Map]; Strand: c
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT15735 - 5-prime edge 
    CCTACTTTCT CCCTGCTCTA ATCTTTGGTC GGTTCACTTT ACAAATCATA 
    AATATATAAG AGTCGGTTTA GTTCTTTACA AAAAATCAAC ATCGATCAAA 
    GTTGATGTCA TGGCTATCAC TCCATTCTTC TCACTCGACG AGGTGGTTGA 
    AGAAGACTCC TCCGTTGGAG ATTTCTCCTT TGATTTATTT GACTTCTCTG 
    CCACTTTTTT TGTCTCTCTT TACCATCATC AACTCCAGAA ATTCAGCTAG 
    GCAATAACAT ACACATGCTC CGATTCGTAG ATATTCAGAG AAATAAACCA 
    AATCAACAAA GAGAGAGACA AAAAACATTC TTTTACGTGC CTAGTGGTTC 
    AGAACTTGGA GGGGCCGACT TCGGTTCAGA ACTTGGAGGG GCCGACTTCG 
    GTTCAGAACT TGGAGGGGTC AACTTCTCTT CTTCCATGAA GAAATGTCCA 
    AATCAACAAC CATTTTATAA CATACACATG CTCCGATTCA TAATATACAC 
    AGAAATAAAC CAAATCAACA TCTATTTTTT ACGTACCTAG TTCATCCTCC 
    CCTCGACTAA CTTTAGAAGC TTCTGAGACA AACCCATCTT GTTTTGGTCC 
    AACACACCGA GAGAAACTTG TGTCGTACTC TTCCTGGTTC AGCACTTCAA 
    AACCAGAATC CGAGCTTCGA ACCCAGAGCG GCTCACGTGT CTGAGCCATC 
    TTCACAAGCT CATCCATAGC CGCAAGAGCT AAATCCAAAT ACCTCGATCT 
    CTGATCAAAA TCAC

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR