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GT15760

CSHL Arabidopsis genetrap mutant lines

Original: GT15760

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15760

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7242992 [Map]; Strand: w
      • AT4G12090.1 - [+] show detail - Cornichon family protein
        Distance: -68; Region: promoter
    Flanking Genome Sequence: GT15760 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    TAGAGAGACA GAGCAAGGCG GCGGTAACGG CGGAGATTGA ACGTTGTATG 
    CGGCGGAAGA CAGCGGAGGA TGGGCGATCT ACTCGATTGG ATTATCTCTT 
    TCTTATTCCT CGCGACGCTT ATAATCATCG TTATTTATCA GGCTTGTTGC 
    CCTAACTTAT AATTAATTAC CTAATATAGT TTTGCTGTTG AAACCAATTC 
    ATAGAGAAAG AAATAATTCT CTTAGCAGTT TTCTTGAATA TTTGCTTTTT 
    TGTTTTTGAT GCACCTGACA TGTTTGGGAG ATTTATAGTT CTATCGCGTA 
    ACCCCTTACA ATGTATCTAG CATAATAACC CGAATGGTGC TACCGGAATT 
    TGGTTTACAA GGACTTCTTT GCTTATGCGA TAGCCCCACC GGACATT

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15760 - 3-prime edge 
    CTCCCAAAGA TCCTTTAATG GTAATAGTAA CAGCAGCTTC TCCCAGGGAT 
    GTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 796578 [Map]; Strand: w
      • AT2G02800.2 - [+] show detail - protein kinase 2B
        Distance: 0; Region: intron6 (3UTR)
    Flanking Genome Sequence: GT15760 - 5-prime edge 
    AATGTTTGCT TCTGTTTATG TATTTTCATC TATCTAGACG ACTTTTTGGA 
    TTTTGTTTCT TAGGATTATT GTGTTTCAAT CCTTTGACTC TTTTCGGATT 
    TGTGGTTTTA TTTATGAATT TGTGTTTCTT AGGAGTCTCT TGCGTTTAAC 
    CTATGTATGT CTCTGCATTT ACATTAATGA TTAATAGAAA ATTTTGGGTT 
    TAACCCTATG TTCATCTCAC TCGA

AT2G02800.2

Model type
Protein coding
Short Description
protein kinase 2B
Curator Summary
Encodes protein kinase APK2b.
Computational Description
protein kinase 2B (APK2B); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase 2A (TAIR:AT1G14370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12090.1

Model type
Protein coding
Short Description
Cornichon family protein
Computational Description
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 603 Blast hits to 603 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 159; Plants - 91; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR