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GT15765

CSHL Arabidopsis genetrap mutant lines

Original: GT15765

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15765

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 340330 [Map]; Strand: c
      • AT5G01881.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 64; Region: intergenic
      • AT5G01890.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 1213; Region: intergenic
    Flanking Genome Sequence: GT15765 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAATTGT 
    TGGTGAAAGA AGTGATTGGG CCAAAGCGTC ACGTTTCTTT AGGCTACCAG 
    GCCCAAATAT TCTGATAATT GTTTTATTGG ACCAAATTCG GCCCATTTAT 
    TGCCGGCTAA ACAGAAAAGG TGGGAATATG GACTTGTTTT ATCTCCCAAC 
    TTAGATTGTC ACAAGACTCT ATTTTAGTGG AGAGCAGTGA TATAAGATTT 
    GCAAAGTCGT CCAGCGCTTA CTAAATTACA ATTGTTTGAA TCTTCTTGGC 
    ATTGACGGAC CAAAATGTTC ATCTCCACTC GACAATAGTC CATATCCACA 
    TTCATTTTCT TATTAAAATA TATAAACCGA AGCCTTTTTT TTGTGGAAAT 
    GTAGCCGAAG GTGCTTTTAA CAGTGGAAGC AAAAAAAGAG GAACAACAAA 
    AGTTGTAATG GAGTTTAAAT TGTAAGGTAA GGAATATTGT AATGTGCTTT 
    TTAGTGTGTA AACGAGGAGT ATAAAGGGGG AGACAGTAGA CACGACATGA 
    GAAAAGCAAA GACATAATAA TGATATTAAA ATGAGAAATG TGCCTGAAAT 
    CTGAATCGTC TGTAATTTAC ACTGAAGTAA CTTTATTTTG AGATACGTTT 
    CTCCGGACCA CCATGTGTGA TGAGTAATGT ATATGCATTG CATGGCTTAA 
    ATGAATGAGA GTGTATGCTC ATTAGCTGAC AAAAGTAAAA CTTAAAAGTT 
    TTGGGAGTAA TGAAAATGAG AAATGAGTAT GTGTGTGGGA CACTCCATAA 
    C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 340252 [Map]; Strand: c
      • AT5G01880.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT5G01881.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15765 - 5-prime edge 
    TCACAGAGGT CAGATGGGAA TGTTGAAAGA GGGACAAAGA AGAAGAAATC 
    GTTGCTTTTA TTTAATACCA AACAATTCAT AACAATCTAA TTCGCTGCTC 
    AGCTTGTTGA TCCATGGGAC TAGAAAATTG ATGACGACGA TGATGAGAGT 
    AACCACAACA CCAACGCCTT TTGCTTTCTT TGCCACTACC ACCGCTCGAT 
    TCCTAACCAA TTTGATGAGT TTCTTCTTCG TATCCACTTC CCTCTGTTTT 
    CGTCCACGGA AGAGAGCAAA AAGACTCCGT CGGAATCTGA CCCAATCGGA 
    CGGTTTGGAT TTGAGATGAT GATGATGCTT TCGGAATCTT AAGAGGATTG 
    ACCATCGATG AAGCGAGAGC TTGTTCCGTA TATTGAGCTT CAAACTGAAA 
    CCTTTGGCTC TCACACATAC TTTAAGCTTC CACACCACCC CCACTCCCAA 
    CCTCCTCCTC TGCTCTCT

AT5G01880.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G10910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01881.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01890.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G56370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR