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GT15796

CSHL Arabidopsis genetrap mutant lines

Original: GT15796

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15796

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10861091 [Map]; Strand: c
      • AT5G28830.1 - [+] show detail - calcium-binding EF hand family protein
        Distance: 2423; Region: intergenic
      • AT5G28840.1 - [+] show detail - GDP-D-mannose 3',5'-epimerase
        Distance: 1082; Region: intergenic
    Flanking Genome Sequence: GT15796 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTCTCAT CCCTAGTTAT 
    CGTCAATGTC GCAAAATCTT GTCCAAAAGA GAGATGTCTG AGAGTGTTGT 
    GGAAGGATGT AGATTTAGAG AATATATTCT TCTTATTGAT CATAAACATG 
    TGTACAAAGT ATATATAGAG AGGAGATTGT CGAGATAAAC CTAACCGACT 
    ATACATGTTA ATATACAAAC TCACAAAGCC CATATAATCT AACTTAGCCC 
    AATAAAGGAG AGTAAAGTGA GGTGTAGGTG TTGGTGGAAA CTAATTCATC 
    TCTAAAAATC TGGAGAAATC GGACAAAGAT GATGAACTTG ATGATCAATA 
    TAGTTAGGCT TTTAGGGAAG TGTGAAGAAG AACTTGATGA TCAAATTTTA 
    GTTAACCCAA GTTAAATTTG GGTTGAGTTA AATGCTTCAT TTGCTTTTGC 
    ATATGATATA AAAGGTGATT TGGGCTCATT TGAGAAGCGA CACGAAGAAG 
    AGTGAGAGCA AGAGCAAAAC CACAACAAAA AATTGGGTGA TTGTTGAGTT 
    GATGATTTGA AATATATCGA TTGTCTTATT TTAGATGCAT AAATGAATAT 
    TTGTTGTATG ATGCTAACGT CAAAGATTTT TGAAAAAACA CTGATAACAT 
    ATATATTCAA AGAAGCTAAC AATTGAGCCG AAAGTTGCTC ATTTGTTTTG 
    AGATTTTACT ATGCTTTTTC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3424764 [Map]; Strand: w
      • AT3G10950.1 - [+] show detail - Zinc-binding ribosomal protein family protein
        Distance: 198; Region: intergenic
      • AT3G10960.1 - [+] show detail - AZA-guanine resistant1
        Distance: 49; Region: intergenic
    Flanking Genome Sequence: GT15796 - 5-prime edge 
    CCTACTTTCA TCCTGGGGTC TTCCCTTTTT GTTTATGTCA TGAACCTTTC 
    AATTCCTATT CAATGAAAGT CAAATTCAAG TGCTTAACCT CTACTAGTGT 
    CAATGTCAAA AAGCATAATA GAGCTCGAAA TTTCAACAGT TTTCTTTATT 
    TTTCCCCAAC ATTTTTACAC TTTTCTCTTC AAAAAATCTA CAAGAGCAAC 
    AAATCAATAA TGCAATCACT TGTCCTTTCA TCCTAAGAAA GAAATCTAAA 
    AAATCAATAG TAACAAAAAT GTAAAATCAA ATCAAAGAAA AACCTAAACG 
    GTAGTATCAA TCTCACTAGC TTTGACAACT CCATTATTAT TATCCTCTTC 
    TTTAACTTTC CTTTTCAAAA ACCCTAATTT CACCAAACCT TCATCTCACT 
    CGA

AT3G10950.1

Model type
Protein coding
Short Description
Zinc-binding ribosomal protein family protein
Computational Description
Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae (InterPro:IPR002674), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G60245.1); Has 1048 Blast hits to 1048 proteins in 363 species: Archae - 286; Bacteria - 0; Metazoa - 326; Fungi - 120; Plants - 130; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10960.1

Model type
Protein coding
Short Description
AZA-guanine resistant1
Curator Summary
Encodes a homolog of the adenine-guanine-hypoxanthine transporter AzgA of Aspergillus nidulans. Function as a plant adenine-guanine transporter. Two closely related genes exist in Arabidopsis: AT3G10960 (Azg1) and AT5G50300 (Azg2).
Computational Description
AZA-guanine resistant1 (AZG1); FUNCTIONS IN: transmembrane transporter activity, purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G50300.1); Has 8325 Blast hits to 8321 proteins in 1933 species: Archae - 105; Bacteria - 6300; Metazoa - 12; Fungi - 117; Plants - 83; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28830.1

Model type
Protein coding
Short Description
calcium-binding EF hand family protein
Computational Description
calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G38810.2); Has 259 Blast hits to 210 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28840.1

Model type
Protein coding
Short Description
GDP-D-mannose 3',5'-epimerase
Curator Summary
Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.
Computational Description
"GDP-D-mannose 3',5'-epimerase" (GME); FUNCTIONS IN: NAD or NADH binding, GDP-mannose 3,5-epimerase activity, catalytic activity; INVOLVED IN: L-ascorbic acid biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 30173 Blast hits to 30172 proteins in 2803 species: Archae - 688; Bacteria - 17773; Metazoa - 351; Fungi - 177; Plants - 999; Viruses - 17; Other Eukaryotes - 10168 (source: NCBI BLink).
Link
InterPro Scan - TAIR