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GT15826

CSHL Arabidopsis genetrap mutant lines

Original: GT15826

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15826

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3119434 [Map]; Strand: c
      • AT3G10113.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -43; Region: promoter
      • AT3G10114.1 - [+] show detail
        Distance: -57; Region: promoter
    2. Chromosome: 1; Position: 6302100 [Map]; Strand: w
      • AT1G18310.1 - [+] show detail - glycosyl hydrolase family 81 protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT15826 - 3-prime edge 
    TTCCCCACCG TTACCGACCG TTTTATCCCT AATTGCCGTG CTCGCTAAGT 
    TTGATCCTTT GTGGGGAGAG AGATACACAG CTCAAGCGTA CAGTCTATTG 
    GCCGGATTTC ATGACGTTTG GGAGAAAAGA TGATAATTAT TCATATTCTA 
    GTTATCCGCG TTACCTGAAG AACATGATTG ACCCGTGGTT AGATG

AT1G18310.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 81 protein
Computational Description
glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: cell wall macromolecule catabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT5G15870.1); Has 441 Blast hits to 435 proteins in 142 species: Archae - 0; Bacteria - 86; Metazoa - 4; Fungi - 179; Plants - 58; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10113.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G18330.2); Has 1478 Blast hits to 1458 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 1117; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR