1. Home
  2. Mutant Lines
  3. GT15835

GT15835

CSHL Arabidopsis genetrap mutant lines

Original: GT15835

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15835

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271152 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT15835 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTCGACAGT ACTCTCCGTC 
    TTTGGTTCAC GGACAGAGAC ATCCACTACA GTACTCTCCT CCAATTCATG 
    GACAACAACA GTTACCATAT GGTATACAAA GGGTTTACAG ACATTCACCA 
    TCTGAAGAAA GATATTTGGG TTTATCCAAT CAAAGGTCTC CTCGCAGTAA 
    CTCATCATTA GACCCCAAAT AGGAGGAATG TAAATTTGTA ACAAAGCTTT 
    TTGTTTTTGC TTAAGTTAGT CATTTATTTA ACTCCCAACA GTCTCAAAAT 
    TTAATTTAAT GTTTGGGGCT TAAGAATGCA AATTTTTTTG CTCCTGTAAT 
    TGACATTTAA GATGCTAATG TTATTGCTTC AGAGGTTTTA GTCAACCTCA 
    GATACATCGA TATCACTATC TAAATAGACC TCTGGCTCTT GGTCATCTGG 
    ATTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271082 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT15835 - 5-prime edge 
    CCTACTTTCT CCCTGACTGC AGATGAAGCT ATGTCCGTGA CCTGGAGAGT 
    ATGAATTTGG GGCCAGATGT TCATATGCAT ATACACTTCT TCCTAACCCA 
    CCATGTGGAA GTGGAACCAT ATATTCCGGG GATCTTCTTG AGCGATGAGG 
    AAAAGATGTT GACGGGCCGA GGTAACTACT CACAAGAGCT GATATTTCAT 
    CTTGGTCATC GTCTCTTTGA CTAGGAAAGC TTCTATCACG GTAGATAGGA 
    GAATATGATG AAGAAGTTAC TGGTGGCATT TCCATGGGTG ACAACCTTGG 
    ACGTTTTATC TGTTGGTTAT ACATTCTCTT GGCAAGTGCG GCTTCCTCCA 
    TTAAACTGAG AGATCTTGCT TTCTCTTTCA TCTCTCTGGA CAACTGAAGA 
    GTGTCTTTCT CCAAGCTAAC AATTTGCTCT TTGATCTGCC ATCCTGGTAG 
    TTCTTTCGCA GGATCTAACT TGTGAGTCTC CATACACTGC ATAACTGATG 
    ATAACACAGC TAGCTGCTTT GTAGCCGCTT CTTTCTGTTG AGAAATAATA 
    TATCAATGGT CAGACTCAGA TGATGATAAA GAGTTCCTAA

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR